Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 192 7e-43 seq11 161 1e-33 seq9 161 1e-33 seq13044 150 2e-30 seq17 87.8 2e-11 >seq2 Length=24697652 Score = 192 bits (212), Expect = 7e-43 Identities = 208/273 (76%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| |||||||| ||||||||||||||||| || || | | |||| || ||||| Sbjct 21047213 GAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCGCCTCAGCGACTTGT 21047272 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | ||| ||||||||| ||||| ||||| || ||||| |||||| |||||||| Sbjct 21047273 ATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGTCGGAAGCGGCGAAG 21047332 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||| ||| ||||| |||||||| ||| ||||| |||| || |||||||| || Sbjct 21047333 AAAGCGAGGATGTGTTTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCCCAGTGG-CG 21047391 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | || ||| || || || ||||||||||||| || || || || |||||||| Sbjct 21047392 GAGATCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCTGCTTTTTTGTA 21047451 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||| | || |||| |||| ||||| Sbjct 21047452 CATTTCCCAGATCTGAGGGTATTGGATTGGGAA 21047484 >seq11 Length=35963958 Score = 161 bits (178), Expect = 1e-33 Identities = 210/290 (72%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| || || || || || ||||| ||||| || || | | |||| || |||||| Sbjct 2850433 GAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCTCAGCGACTTGG 2850374 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | || |||| |||| ||||| ||||| || ||||| ||||| ||||||||| Sbjct 2850373 ATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAGAGGCGGCGAAG 2850314 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| |||||||| |||| ||||||||| ||| ||||| |||| | |||||||| | Sbjct 2850313 AAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTCTCCCAGTGGCGG 2850254 Query 869813 GTGTCGGCGCTGAGG----TCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| ||||| || || |||||||||||||||| || || ||||| || || Sbjct 2850253 ACGTC----CTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCGGCTTTCTT 2850198 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918 ||||||||||| | || |||| | || || || | | ||| |||| Sbjct 2850197 ATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACATGCAAAAACGGT 2850148 >seq9 Length=21753712 Score = 161 bits (178), Expect = 1e-33 Identities = 201/273 (74%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| || || |||||||| ||||||||||| || || | | |||| || ||||| Sbjct 19304220 GAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCTCAGCGACTTGA 19304279 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 | | ||||||||| ||||| ||||| || ||||| |||||| ||||||||| Sbjct 19304280 ATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGGAGGCGGCGAAG 19304339 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||| ||| ||||| |||||||| || |||||| |||| || |||| ||| || Sbjct 19304340 AAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGTGAGAGAATCCCAATGG-CG 19304398 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | || || || || || ||||||||||||| || || ||||| || ||||| Sbjct 19304399 AAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGGCTTTCTTGTA 19304458 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||| | || |||| |||| || || Sbjct 19304459 CATTTCCCAGATCTGAGGGTATTGGATTGGAAA 19304491 >seq13044 Length=2634 Score = 150 bits (166), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| || || || || || ||||||||||| || | | || Sbjct 1306 GCTTGGCCAATTCACCGGGCAGGAGGAGACGGACAGCAGTCTGGATCTCCCGGGAGGTGA 1247 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| ||||||||| |||| |||||| | | |||| | |||| | Sbjct 1246 TGGTGGAGCGCTTGTTGTAGTGCGCCAAGCGGCTGGCCTCAGCGGCGATCCTCTCGAAGA 1187 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||||| | |||| |||||| || |||||||| Sbjct 1186 TGTCGTTCACGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATACCGGTGTCGGGGT 1127 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| || || ||||||||| Sbjct 1126 GCACTTGCTTAAGTACTTTGTAGATG 1101 >seq17 Length=21299880 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | ||||||| |||||| || ||| ||| || |||| || || Sbjct 1174052 GCTGCTAACTACTTGAACATCAAAAGTCTGCTGGACCTTACATGCCAGACTGTAGCAGAC 1173993 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || ||||| || ||||||||||| ||||||||| Sbjct 1173992 ATGATCAAGGGTAAGACTCCTGAGGAAATTCGCAAGACCTTCAACATCAAG 1173942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106025336057641