Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq13044 187 4e-41 seq2 152 8e-31 seq11 125 1e-22 >seq13044 Length=2634 Score = 187 bits (206), Expect = 4e-41 Identities = 186/241 (77%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || || ||||||||| |||||| ||| ||| ||| Sbjct 1345 TGTACTTGGTCACAGCCTTGGTGCCTTCAGACACGGCGTGCTTGGCCAATTCACCGGGCA 1286 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || || ||||||||||| |||| | ||| ||| ||||||||| | Sbjct 1285 GGAGGAGACGGACAGCAGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 1226 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||||| |||||| | | |||| | |||| |||||||| || || ||||||| Sbjct 1225 GCGCCAAGCGGCTGGCCTCAGCGGCGATCCTCTCGAAGATGTCGTTCACGAAGGAGTTCA 1166 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | ||| |||||| || |||||||||||| ||||| || || |||| Sbjct 1165 TGATGGACATGGCCTTGGAGGAGATACCGGTGTCGGGGTGCACTTGCTTAAGTACTTTGT 1106 Query 1485710 A 1485710 | Sbjct 1105 A 1105 >seq2 Length=24697652 Score = 152 bits (168), Expect = 8e-31 Identities = 187/250 (75%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||| | ||| ||||||| | ||||| ||||| ||| ||||| ||| Sbjct 21047258 GCCTCAGCGACTTGTATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCG 21047317 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||| || ||||||| ||| ||||| ||||| || ||| ||||| |||| Sbjct 21047318 TCGGAAGCGGCGAAGAAAGCGAGGATGTGTTTGATGAAGTGGCGTTCGCCGTCGGTGAGG 21047377 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 ||| |||||||| | | | || ||| ||||| || ||||||||||| || || || Sbjct 21047378 GAGTCCCAGTGG-CGGAGATCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAATGAAGC 21047436 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA-GAACAAAGC 796387 || || ||||||||||| ||||| ||| | |||| |||| ||||||| | | ||| | Sbjct 21047437 TTCTGCTTTTTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACATGCAGAAA-C 21047495 Query 796388 GATTGGGGTT 796397 ||| ||||| Sbjct 21047496 GATCAGGGTT 21047505 >seq11 Length=35963958 Score = 125 bits (138), Expect = 1e-22 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||||| || |||| || | ||||| ||||| ||| ||||| ||| Sbjct 2850388 GCCTCAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCG 2850329 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| || ||||||||||| |||| |||||| || ||| ||||| |||| Sbjct 2850328 TCAGAGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGG 2850269 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCG----AGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 |||||||| || | || | | | || || || |||||||||||||| || || Sbjct 2850268 TTCTCCCAGTGG--CG-GACGTC-CTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGA 2850213 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || ||||| || || ||||||||||| ||| | |||| | || || |||| Sbjct 2850212 TGCTTCGGCTTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACA 2850160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914802578083547