Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 107 5e-18 seq11 104 6e-17 seq17 98.7 2e-15 seq2 91.5 3e-13 >seq9 Length=21753712 Score = 107 bits (118), Expect = 5e-18 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | ||||| |||||| | || || || |||||||||||| Sbjct 12062445 CATTTGAATGATGGGGACTTTGTTCTATTCAATCGCCAGCCCAGTCTTCATAAAATGTCT 12062504 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG 305426 || |||| ||||| | ||||| | | || | || ||||| | || ||| ||| Sbjct 12062505 ATCATGGGTCATAGAATCAAAATCATGCCTTATTCTACTTTTCGTCTTAACTTGTCAGT- 12062563 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | | || |||||||| ||||||||||| |||||||||||||||||||| ||||| | Sbjct 12062564 -TACTTCACCATATAATGCTGATTTTGATGGGGATGAAATGAATATGCATGTTCCTCAGT 12062622 Query 305487 CA 305488 || Sbjct 12062623 CA 12062624 Score = 107 bits (118), Expect = 5e-18 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | ||||| |||||| | || || || |||||||||||| Sbjct 12066636 CATTTGAATGATGGGGACTTTGTTCTATTCAATCGCCAGCCCAGTCTTCATAAAATGTCT 12066695 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG 305426 || |||| ||||| | ||||| | | || | || ||||| | || ||| ||| Sbjct 12066696 ATCATGGGTCATAGAATCAAAATCATGCCTTATTCTACTTTTCGTCTTAACTTGTCAGT- 12066754 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | | || |||||||| ||||||||||| |||||||||||||||||||| ||||| | Sbjct 12066755 -TACTTCACCATATAATGCTGATTTTGATGGGGATGAAATGAATATGCATGTTCCTCAGT 12066813 Query 305487 CA 305488 || Sbjct 12066814 CA 12066815 Score = 100 bits (110), Expect = 7e-16 Identities = 141/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCT- 131854 ||| ||||||||| |||||||| | |||||| || | ||| | ||| ||| Sbjct 19304130 TTACAAAGAAAGCTGAATGGGCGTTACGATGGATC---GACGGTTCAG--AATCCTTCGC 19304076 Query 131855 ACAA-GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGC 131913 | || | || || ||||||||||| |||||||| ||||| || || || |||||||| Sbjct 19304075 AGAACGCCTCGTTGCTTTTGCTTGCGTTGAAGGAATATTTTTCTCTGGAAGCTTCTGTGC 19304016 Query 131914 TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCAT 131973 || ||||||||||| || || || || ||||| || || |||| || || | || || Sbjct 19304015 GATATTTTGGCTTAAAAAACGCGGGTTAATGCCCGGTCTTACATTCTCGAACGAGTTGAT 19303956 Query 131974 CTCGAGAGATGAAG 131987 ||| ||||||||| Sbjct 19303955 ATCGCGAGATGAAG 19303942 >seq11 Length=35963958 Score = 104 bits (114), Expect = 6e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| || ||||||||||||||||| || ||||| || || ||||||||||| || Sbjct 2850585 CTTGTTGCGTTTGCTTGTGTTGAAGGAATTTTCTTCTCTGGAAGCTTCTGTGCTATATTC 2850644 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 |||||||||||| | || | ||||||||||| | || || || | || || ||| || Sbjct 2850645 TGGCTTAAGAAGAGAGGTCTTATGCCTGGACTTACCTTCTCAAACGAGTTGATATCGCGA 2850704 Query 131981 GATGAAG 131987 ||||||| Sbjct 2850705 GATGAAG 2850711 >seq17 Length=21299880 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| |||| ||||| |||||| | || || || |||||||||||| Sbjct 1111830 CATTTGAATGATGGAGATTTTGTTCTATTCAATCGTCAGCCCAGTCTTCATAAAATGTCT 1111771 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG 305426 || |||| |||| | | ||| | | || | || || || | || ||| ||| Sbjct 1111770 ATCATGGGGCATAGAATTAAAATCATGCCTTATTCTACTTTCCGTCTTAACTTGTCAGT- 1111712 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | | || |||||||| |||||||| ||||||||||||||||||||||| ||||| | Sbjct 1111711 -TACTTCACCATATAATGCTGATTTTGACGGAGATGAAATGAATATGCATGTTCCTCAGT 1111653 Query 305487 CA 305488 || Sbjct 1111652 CA 1111651 >seq2 Length=24697652 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || || || |||||||||||||||||||| ||||| || || |||||||| || ||| Sbjct 21047061 CTCGTTGCGTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGAAGCTTCTGTGCGATATTT 21047002 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||| | ||||| || || | |||||||| || | || || || | || |||||| || Sbjct 21047001 TGGTTGAAGAAACGAGGCCTTATGCCTGGTCTTACCTTCTCAAACGAGTTAATCTCGCGA 21046942 Query 131981 GATGA 131985 ||||| Sbjct 21046941 GATGA 21046937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186606408432653