Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq18 113 3e-20 seq19 102 5e-17 seq20 100 2e-16 seq5 98.7 7e-16 seq17 96.9 2e-15 seq6 96.9 2e-15 seq4 96.9 2e-15 seq3 96.9 2e-15 >seq18 Length=16588007 Score = 113 bits (124), Expect = 3e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || |||||||||| ||| ||||| |||| || | |||||||||||| || Sbjct 12189702 CTCCTTCTGAATATTGTAATCGGCGAGAGTGCGACCGTCTTCGAGTTGTTTTCCGGCGAA 12189761 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||||||||| || | || | ||||| ||||| || || | | |||| Sbjct 12189762 GATCAAACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACAT 12189820 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| ||| ||||| || || | || || |||||||| |||| ||||| | Sbjct 12189821 TGTCGATGGTATCGGAGGATTCAACCTCGAGGGTAATGGTTTTACCCGTTAGGGTTTTCA 12189880 Query 33737 CAAAGATCTGCATAGT 33752 | ||||||||||| || Sbjct 12189881 CGAAGATCTGCATCGT 12189896 >seq19 Length=18159812 Score = 102 bits (112), Expect = 5e-17 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 33537 TAACACCAA-ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGT 33595 ||| | ||| ||| ||||| || ||||| || |||||||| | || || | | | | Sbjct 4557361 TAAGAACAAGATGAAGAGTAGATTCCTTTTGAATATTGTAATCAGCTAGGGTTCTTCCAT 4557302 Query 33596 CGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT 33655 | || | |||||| || || ||||||||||| || |||||| | || || |||||||| | Sbjct 4557301 CTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGTGGAACTCCTTCTTTAT 4557242 Query 33656 CGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATC 33714 | || || |||| |||| ||| | ||||| || ||| || || | || || Sbjct 4557241 CTTGGATCTTGGCTTTC-ACATTGTCGATTGTGTCACTGCTTTCAACTTCTAGGGTTATT 4557183 Query 33715 GTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||| |||| ||||| || ||||||||||| Sbjct 4557182 GTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 4557148 >seq20 Length=21988590 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| |||| ||| Sbjct 4225113 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCCAGTTGC 4225172 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | |||||||| || | || | ||||| ||||| ||| || Sbjct 4225173 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGAATCTTG 4225232 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| |||| ||||| ||||| || || | || || ||||| || || Sbjct 4225233 GCCTTCA-CATTGTCAATTGTGTCTGAGGATTCAACCTCGAGGGTTATTGTTTTCCCAGT 4225291 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || ||||| || ||||||||||| Sbjct 4225292 TAGGGTTTTCACGAAGATCTGCAT 4225315 >seq5 Length=26376911 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || |||||||||| ||| ||||| |||| || | |||||||||||| || Sbjct 15676329 TCCTTCTGGATATTGTAATCGGCGAGGGTGCGACCGTCTTCGAGTTGTTTTCCGGCGAAG 15676270 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||| ||||||| || | || | ||||| ||||| || || | | |||| Sbjct 15676269 ATCAAATGCTGCTGGTC-GGTGGAATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 15676212 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||| | | ||||| || || | ||||| |||||||| ||| | | ||| || Sbjct 15676211 GTCGATGGTATGGGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTT-AGGGTTTCAC 15676153 Query 33738 AAAGATCTGCATAGT 33752 |||||||||||| || Sbjct 15676152 AAAGATCTGCATCGT 15676138 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| || || | || || || ||| || || |||||||| || | Sbjct 2893696 CCTCCCCTCAGACGCAAGACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCTGCA 2893755 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | ||||| || ||||||||||| | ||||| ||| |||| Sbjct 2893756 AGAGTACGTCCATCTTCAAGCTGTTTCCCAGCAAAAATCAACCTTTGCTGGTCTGGCGGG 2893815 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| |||||||| ||| || |||| |||| ||| | ||||| ||| || Sbjct 2893816 ATACCCTCTTTGTCTTGAATCTTAGCTTTC-ACATTGTCAATTGTGTCTGAGCT---CTC 2893871 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || || || || | || || ||||| ||||||||| Sbjct 2893872 TACCTCCAGAGTGATTGTCTTGCCAGTAAGTGTCTTGACAAAAATCTGCATA 2893923 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| ||| ||||| ||||||||||| | Sbjct 2894379 ACCACCACGAAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGC 2894438 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||| || || |||||||| | |||||| || ||| | || Sbjct 2894439 AAGGGTACGCCCATCCTCAAGTTGCTTGCCAGCAAAAATGAGACGCTGTTGGTCTGGTGG 2894498 Query 33642 CACACCTTCTTTGTCGGCAATTTT 33665 | ||||| ||||| |||||| Sbjct 2894499 GATCCCTTCCTTGTCTTGAATTTT 2894522 >seq17 Length=21299880 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||| ||||| |||| || | ||||||||||| || Sbjct 4985005 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAG 4984946 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| || | || | ||||| ||||| || || | | |||| Sbjct 4984945 ATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 4984887 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||| ||| ||||| || || | ||||| ||||| || |||| ||||| || Sbjct 4984886 GTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCAC 4984827 Query 33738 AAAGATCTGCATAGT 33752 ||||||||||| || Sbjct 4984826 GAAGATCTGCATCGT 4984812 >seq6 Length=33111450 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || |||||||||| ||| ||||| |||| || | ||| |||||||| || Sbjct 5099836 TCCTTCTGGATATTGTAATCGGCGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAG 5099777 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||| || | || | ||||| ||||| || || || | ||| Sbjct 5099776 ATCAGTCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATT 5099718 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || || || || | || || |||||||| |||| ||||| || Sbjct 5099717 GTCGATGGTGTCAGAGGACTCAACCTCGAGGGTTATGGTTTTACCCGTTAGGGTTTTCAC 5099658 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 5099657 AAAGATCTGCAT 5099646 >seq4 Length=27333975 Score = 96.9 bits (106), Expect = 2e-15 Identities = 154/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| |||| || | ||| Sbjct 22406913 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCGAGCTGT 22406854 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | || ||||| || | || | ||||| ||||| || || Sbjct 22406853 TTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTG 22406794 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | |||||| ||||| || |||| || ||||| ||||| || Sbjct 22406793 GCCTTC-ACATTGTCGATTGTGTCGGAAGATTCAACCTCAAGGGTTATCGTCTTACCCGT 22406735 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTTT 33762 || ||||| || || |||||||| | |||| |||| Sbjct 22406734 TAGGGTTTTCACGAAAATCTGCATCG-TGGTTCGTTT 22406699 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || || ||||| |||| ||| ||||| |||| || | ||||||||||| || Sbjct 24477352 TCTTTCTGGATATTGTAGTCGGCGAGGGTGCGACCGTCCTCTAGCTGTTTTCCGGCGAAG 24477293 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| ||||||||| || | || | ||||| ||||| ||| || ||| | || Sbjct 24477292 ATCAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCCTGAATCTTAGCTTTTACGTTA 24477233 Query 33679 GTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 | |||||| ||||| || | ||||| || || || |||| ||||| || Sbjct 24477232 TCGATTGTGTCGGAGCTCTCCACCTCTAGGGTGATGGTCTTTCCGGTTAGGGTTTTCACG 24477173 Query 33739 AAGATCTGCAT 33749 ||||| ||||| Sbjct 24477172 AAGATTTGCAT 24477162 >seq3 Length=30153019 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||| ||||| |||| || | ||||||||||| || Sbjct 15142529 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAG 15142588 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||| || | || | ||||| ||||| || || | | |||| Sbjct 15142589 ATGAGACGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 15142647 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||| ||| ||||| || || | ||||| ||||| || |||| ||||| || Sbjct 15142648 GTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCAC 15142707 Query 33738 AAAGATCTGCATAGT 33752 ||||||||||| || Sbjct 15142708 GAAGATCTGCATCGT 15142722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328649625476160