Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11 194 2e-44 seq2 178 2e-39 seq9 167 3e-36 seq2896 149 9e-31 seq1 107 3e-18 >seq11 Length=35963958 Score = 194 bits (214), Expect = 2e-44 Identities = 409/602 (68%), Gaps = 10/602 (2%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| |||||||| || || ||||||| || || ||||| || || || Sbjct 2850736 AAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGAAGGTA 2850677 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732 ||||||||||| ||||| | ||| || ||||| ||||| ||| || ||| |||||| || Sbjct 2850676 AGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCA-CAGAAGCTTCCAGAGAA 2850618 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACT-TGTATCATT 39789 ||| || ||||| || ||||| |||||||| | ||| || | | | || | | Sbjct 2850617 GAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAGGATTCTGAACC--- 2850561 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 || ||||| ||||| ||||||||| || |||||||| |||||||| | || Sbjct 2850560 ATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCAACCGC 2850501 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 | || | | | ||| ||| | ||| || | |||||| || | | ||||| || Sbjct 2850500 GTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGACTGTA 2850441 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| || |||||||| |||||||| || || || |||||||| ||| | || |||| Sbjct 2850440 CATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGCCTCAGC 2850381 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAA-ATTTTCATTCACTATTCCATCACTAG 40028 | ||| | || | || || | ||||| ||| |||||| || || || ||| | Sbjct 2850380 GACTTGGATTTCAG-TCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTCAGAGG 2850322 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 |||| || || || | || ||||| | ||| | ||| || || | || | || Sbjct 2850321 CGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTTCTCCC 2850262 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || || | || | ||| ||||| || || ||||| || || || || || | Sbjct 2850261 AGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTCGGCTT 2850202 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGAT 40208 | || ||||| | ||| || | | | ||||| |||||||| || ||| | | ||||| Sbjct 2850201 TCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACATGCAAAAACGGTCTGGAT 2850142 Query 40209 TT 40210 || Sbjct 2850141 TT 2850140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | ||||||||||| |||||||||||| | | || | ||||| | Sbjct 31406441 GTCCCGGCATTGAACAGAGTAGGAGATGCATGAGTGAACCATCTCTGTGACATCAGATGG 31406382 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| | ||| || ||||| | || |||||||| | | || | ||||||| Sbjct 31406381 TATGTTTTGACAGCAGAATCTATGTTATCCTTGTGAATTCCAACAGAAACCCTCATCAAC 31406322 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||||| ||| || || | | ||||| ||||| || | || || Sbjct 31406321 ATGTGCTGAGGTCTTTCAACAACTTGTCCTTCAACCTTCAAGAGGTAGGACCTCTCAAGG 31406262 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 31406261 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATATATGAT 31406215 >seq2 Length=24697652 Score = 178 bits (196), Expect = 2e-39 Identities = 392/582 (67%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| ||||| |||| |||||||||| ||||| ||||| || || || Sbjct 21046910 AAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAGAAGGTA 21046969 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 || |||||||| || || || || || | ||||||||| ||| || ||| | ||||| || Sbjct 21046970 AGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCA-CAGAAGCTTCCAGAGAA 21047028 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACT-TGTATCATT 39789 ||| || ||||| || ||||| ||||| || | || || | | | || | | | Sbjct 21047029 GAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCAGCGAAGGATTCTGAACCGTC 21047088 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 ||||| | ||||| |||||||| || || ||||| || || ||||| || Sbjct 21047089 G---ATCCAACGAAGCGCCCACTCAGCTTTTTTAGCAACGCAAGGTATCGTCTCTATTGC 21047145 Query 39850 ATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATA 39909 | || | || ||| ||| | |||||| | ||| || || | | |||||||| Sbjct 21047146 GTGGAATAATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAGGAGACTATA 21047205 Query 39910 CATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 39969 ||| || |||||||| || || || || ||||| || ||||| || | || |||| Sbjct 21047206 CATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAATGCACGCGCCTCAGC 21047265 Query 39970 AATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGC 40029 | ||||| ||||| || ||| | || | |||||| || ||||| || ||| Sbjct 21047266 GACTTGTATCTCTGTCATGAACCTTCCGGCGAGGTTTTCAAGGACGATTCCGTCGGAAGC 21047325 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCA 40089 ||| || || || | | ||||| || || | ||| || || | | ||| Sbjct 21047326 GGCGAAGAAAGCGAGGATGTGTTTGATGAAGTGGCGTTCGCCGTCGGTGAGGGAGTCCCA 21047385 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149 || || ||||| || | ||| |||||||| || ||||| || || || ||||| || Sbjct 21047386 GTGGCGGAGATCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCTGCTTT 21047445 Query 40150 TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 ||||||||| | ||| || | | | ||||| ||||| || || Sbjct 21047446 TTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACAT 21047487 >seq9 Length=21753712 Score = 167 bits (184), Expect = 3e-36 Identities = 401/592 (68%), Gaps = 26/592 (4%) Strand=Plus/Plus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 ||| || ||||| |||||||| || || ||||||| || || ||||| || ||||| Sbjct 19303916 TAAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAATGT 19303975 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAA 39731 || || ||||||| || || ||||| ||||||||||| ||| || ||| |||||| | Sbjct 19303976 AAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCA-CAGAAGCTTCCAGAGA 19304034 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACT-TGTATCAT 39788 | || || ||||| || ||||| ||||| || | ||| || | | | || | | Sbjct 19304035 AAAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAAGGATTCTGAACC-- 19304092 Query 39789 TATGTATCCACTTCTGT---GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 | ||||| || || ||||| ||||||||||| | |||||||| || ||||| | Sbjct 19304093 -GTCGATCCA--TC-GTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAA 19304148 Query 39846 TAGCATTAAAGAGATAAT--GTTTT--TCATCACTATCTTTAACATATGTATCTATTAAC 39901 | || | | ||||| ||||| ||| | ||||| | |||||| || | | Sbjct 19304149 TCGCGT----GGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGG 19304204 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 || |||||||| || || ||||| |||||||| || || || || ||||| ||| | Sbjct 19304205 AGGCTATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGC 19304264 Query 39962 GCTTCAGTAATTTGTACCTCTGA-ACA-AAATCTTTCCGCCAAATTTTCATTCACTATTC 40019 || |||| | ||| | | ||| || || ||| | || | |||||| || |||| Sbjct 19304265 GCCTCAGCGACTTGAA--TTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTC 19304322 Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079 | || ||||| || || || | | ||||| || || | ||||||| || | Sbjct 19304323 CGTCGGAGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGTGA 19304382 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 || ||| | | ||||| || | ||| |||||||| || ||||| || || | Sbjct 19304383 GAGAATCCCAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAG 19304442 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 | || || || |||||||| | ||| || | | | ||||| |||||||| || Sbjct 19304443 CTTCGGCTTTCTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAAACAT 19304494 >seq2896 Length=25968 Score = 149 bits (164), Expect = 9e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | |||||| |||||||| || Sbjct 4779 TCCACCTTGATCAACATAGCGCGCAGTATCATTGAACACACGCAGCATTGGAATAATGCC 4720 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| ||| ||||| ||| | || |||||||| || ||| Sbjct 4719 ATTGGATGTCCCATTTGTCCCACGAATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 4660 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || |||| ||| | |||||| |||||| || |||||||| Sbjct 4659 GACACCAATTCCTCCAGCTGATTTACTGATGACAGCACACTCTTTCAAAGTTTCATATAT 4600 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 ||||||||| ||||||||| ||||| | ||| || || ||| ||| ||| Sbjct 4599 ACCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTACTCATCTGA 4548 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68737 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATT 68796 ||||||||| |||| ||||| ||||||||||| | | | |||||||| || ||||| Sbjct 6753 ACTCTACGACTGTAGATATTTGAAGTATATGGTTCAAAACACTCATTATTACCAAGAATC 6694 Query 68797 TGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTT 68856 || ||| |||||||| |||||||| || || | | |||||| | ||||| | || Sbjct 6693 TGGCTAGTAGATGCAGTAGGCATAGGGGCAACAAGAAGTGAATTTCTCACACCATTTTTT 6634 Query 68857 ATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGA 68916 | || | || |||| |||||||||||| ||| || ||| ||| ||| | Sbjct 6633 AATATCCTCTCCCTTAGTGCATTCCAATCCCAACGATTTGAGGGTGTCACACCCCACATG 6574 Query 68917 TCGTATTGTAGAATTCC 68933 || ||| |||||||| Sbjct 6573 TCTGGTTGAAGAATTCC 6557 >seq1 Length=36457581 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| |||| ||||||||||| |||||||||||| | | ||| | || | | Sbjct 33689444 GTTCCGGCATTGAATAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAGGTGG 33689503 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| | ||| || || || || || |||||||| | | || | ||||||| Sbjct 33689504 TAAGTTTTGACAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGAAACCCTCATCAAC 33689563 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||||| ||| || ||| | | ||||||||||| || | || || Sbjct 33689564 ATGTGCTGAGGTCTTTCAACAACTTTTCCTTCAACCTTCAACAGGTAGGACCTCTCAAGG 33689623 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 33689624 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCATATATGAT 33689670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686792257335720