Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 178 1e-39 seq11 167 2e-36 seq8 84.2 2e-11 >seq2 Length=24697652 Score = 178 bits (196), Expect = 1e-39 Identities = 397/588 (68%), Gaps = 16/588 (3%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | | || ||| ||||||||||||||||| | || ||||| | Sbjct 21047486 TGTTCCCAATCCAATACCCTCAGATCTGGGAAATGTACAAAAAAGCAGAAGCTTCATTCT 21047427 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCACATTGGATTGCATTAAA-ACC 43824 |||| || |||||||| ||| | || |||| || || | ||| | | | | || Sbjct 21047426 GGACCGCCGAAGAAGTCGATCTCTCTCAAGATCTCCGCCACTGGGACTCCCTCACCGACG 21047367 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | ||| || || || | | || || || || || |||||| || || Sbjct 21047366 GC--GAACGCCACTTCATCAAACACATCCTCGCTTTCTTCGCCGCTTCCGACGGAATCGT 21047309 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 | |||||| | | | |||| | ||| | ||| | | || || || || Sbjct 21047308 CCTTGAAAACCTCGCCGGAAGGTTCATGACAGAGATACAAGTCGCTGAGGCGCGTGCATT 21047249 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || || || || || || || || ||||| ||||| || ||||| ||||| || | || Sbjct 21047248 CTACGGCTTCCAGATCGCAATCGAGAATATCCATTCTGAGATGTATAGTCTCCTTCTTGA 21047189 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 ||||| ||||||||| || || ||||||| || | || ||||| || |||| Sbjct 21047188 AACGTATATCAAAGATTCCGCTGATAAAAATCGATTATTCCACGCAATAGAGACGATACC 21047129 Query 44065 T-GCGAT--TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTC 44118 | ||| | |||| ||||| || ||||| ||| ||||| | |||| || || Sbjct 21047128 TTGCGTTGCTAAA---AAAGCTGAGTGGGCGCTTCGTTGGATCGACGGTTCA---GAATC 21047075 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 || | ||||| || || |||||||| ||| ||||| |||||||| || ||| || Sbjct 21047074 CTTCGCTGAACGTCTCGTTGCGTTTGCTTGTGTTGAAGGTATTTTCTTCTCTGGAAGCTT 21047015 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 || ||||||||||| ||||||||||| | |||||||| | || || ||||| || Sbjct 21047014 CTGTGCGATATTTTGGTTGAAGAAACGAGGCCTTATGCCTGGTCTTACCTTCTCAAACGA 21046955 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 |||||| || ||||| || ||||| || ||||| || |||||||| Sbjct 21046954 GTTAATCTCGCGAGATGAGGGTTTACACTGTGATTTCGCGTGCTTGTT 21046907 >seq11 Length=35963958 Score = 167 bits (184), Expect = 2e-36 Identities = 427/642 (67%), Gaps = 25/642 (4%) Strand=Plus/Plus Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||| || || || |||||||| || |||||||| ||||| || ||||||||||| || | Sbjct 2850395 TTTCTACGGATTCCAAATTGCTATTGAAAATATCCATTCTGAGATGTACAGTCTCCTTCT 2850454 Query 44002 AGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061 || || || ||||| ||| | || || | || ||||| | ||| | |||||| | Sbjct 2850455 TGAAACATATATCAAGGATTCGGCTGATAAAAACCGTTTGTTCCACGCGGTTGAAACAAT 2850514 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT---TCAAATGATTC 44118 ||| || ||||| || ||||| | ||||| || ||| || || Sbjct 2850515 CCCTTGTGTTGCGAGGAAAGCTGAGTGGGCGTTACGTTGGATCGATGGTTCA---GAATC 2850571 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 || | || || ||||| |||||||| ||| ||||| |||||||| || ||| || Sbjct 2850572 CTTCGCTGAGCGCCTTGTTGCGTTTGCTTGTGTTGAAGGAATTTTCTTCTCTGGAAGCTT 2850631 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 || ||||| ||| | ||||| ||||| | |||||||| | || || ||||| || Sbjct 2850632 CTGTGCTATATTCTGGCTTAAGAAGAGAGGTCTTATGCCTGGACTTACCTTCTCAAACGA 2850691 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA-TATC 44297 ||| ||| || |||||||| | ||||| ||||| ||||||||| ||| | | || Sbjct 2850692 GTTGATATCGCGAGATGAAGGGCTTCATTGTGATTTCGCTTGCTTG----TTGTACTCTC 2850747 Query 44298 TA--GGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAA 44355 || | ||| |||||| |||| || | | | ||||| || || || | Sbjct 2850748 TAATGAAGA--ATAAGCTTTCAGAGGAGCGTGTGAAGGGGATTGTGCGTGATGCTGTGGA 2850805 Query 44356 GATAGAACAAGA----ATTTATGACAACAGCA-TTACCTGTAAATTTAATAGGAATGAAT 44410 |||||| || ||| |||| ||| || | ||| || | || |||||| Sbjct 2850806 GATAGAGAGGGAGTTTGTTTGTGAC----GCACTTCCATGT-GCGTTGGTTGGGATGAAT 2850860 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 | ||||||||| ||||||||||| | |||| ||| | ||| | | || || Sbjct 2850861 GGGGTTTTGATGAGTCAATATATTGAGTTTGTTGCGGATAGGTTATTGGGTGCGCTTGGG 2850920 Query 44471 TGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAA 44530 || | ||| ||| ||| || ||||||||||||| |||||| |||||| | || Sbjct 2850921 TGTGGTAAGGTGTATGATGTGCAGAACCCGTTTGATTGGATGGAACTAATTTCGCTTCAA 2850980 Query 44531 GGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 || || || || || ||||| || | ||||| || |||||| Sbjct 2850981 GGGAAGACTAATTTCTTTGAGAAGAGGGTTGGTGATTATCAG 2851022 >seq8 Length=25521646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 41069 TTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATC 41128 ||| || || ||||| || || ||||| || | || || ||| |||||||| |||| Sbjct 24540641 TTTATTTTG-CAGTTCTATGTAGCAAATGGGGAGTTATCCTGCCAAATGTATCAACGATC 24540583 Query 41129 AGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATAT 41188 | ||||||||| || || || ||||||||||| || |||||| ||||| || | || Sbjct 24540582 TGCTGACATGGGCCTGGGTGTGCCGTTTAACATTGCATCTTATGCGCTGCTGACATGCAT 24540523 Query 41189 GATTGCACACGTT 41201 |||||| || ||| Sbjct 24540522 GATTGCTCATGTT 24540510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397390252455865