Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 seq11 98.7 1e-15 seq1 87.8 2e-12 >seq2 Length=24697652 Score = 105 bits (116), Expect = 7e-18 Identities = 348/529 (66%), Gaps = 18/529 (3%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| || ||||| | |||||||||| ||| ||| || | || ||| | ||| | Sbjct 21047453 TGTACAAAAAAGCAGAAGCTTCATTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGATC 21047394 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||||| |||| ||| ||| | || |||||||| |||| || | Sbjct 21047393 TCCGCCACTGGGACTCCCTCACCGACGGCGAACGCCACTTCATCAAACACATCCTCGCTT 21047334 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG---G 59769 ||||||| || || ||||| || | ||||| | | | ||| || || | | Sbjct 21047333 TCTTCGCCGCTTCCGACGGAATCGTCCTTGAAAACCTCGCCG-GAAGGTT--CATGACAG 21047277 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CGAGTCTAT 59827 | | || | || ||||| || | ||||||| | ||| ||| ||| |||| ||| Sbjct 21047276 AGATACAAGTCGCTGAGGCGCGTGCATTCTACGGCTTCCAGATCG--CAATCGAGAATAT 21047219 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||| || |||| ||| ||| | | || | || |||| ||| | | || || Sbjct 21047218 CCATTCTGAGATGTATAGTCTCCTTCTTGAAACGTATATCAAAGATTCCGCTGATAAAAA 21047159 Query 59888 TGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | | | |||| || ||||||||| | || || ||| ||||||| || ||||| Sbjct 21047158 TCGATTATTCCACGCAATAGAGACGATACCTTGC-GTTGCTAAAAAAGCTGAGTGGGCGC 21047100 Query 59947 TGCAGTGGAT-GA--GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG 60003 | | ||||| || || | || ||| || || |||||||| | || ||||| || | Sbjct 21047099 TTCGTTGGATCGACGGTTC---AGAATCCTTCGCTGAACGTCTCGTTGCGTTTGCTTGTG 21047043 Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCC 60063 | ||||| || ||||||||||| |||||||| || || ||| | || || || |||| Sbjct 21047042 TTGAAGGTATTTTCTTCTCTGGAAGCTTCTGTGCGATATTTTGGTTGAAGAAACGAGGCC 21046983 Query 60064 TCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 | ||||| || || | ||||| |||||| | || || || || ||||| Sbjct 21046982 TTATGCCTGGTCTTACCTTCTCAAACGAGTTAATCTCGCGAGATGAGGG 21046934 >seq11 Length=35963958 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| || || |||||||| ||||||||||| ||||||||||| |||||||| Sbjct 2850591 GCGTTTGCTTGTGTTGAAGGAATTTTCTTCTCTGGAAGCTTCTGTGCTATATTCTGGCTT 2850650 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| || || | ||||| |||||| |||| || || || || Sbjct 2850651 AAGAAGAGAGGTCTTATGCCTGGACTTACCTTCTCAAACGAGTTGATATCGCGAGATGAA 2850710 Query 60111 GGCCTCCAT 60119 || || ||| Sbjct 2850711 GGGCTTCAT 2850719 >seq1 Length=36457581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||||||||||||| ||||| || ||| || | | ||| || || || |||||| Sbjct 33688210 GATGCCAGGTTGCACACAGCCGTTTCTGTCGGACTTGTATACTCAATTATCTCAGTGCAC 33688269 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || || ||||| || ||||| | |||| ||||||||| ||| ||| || | |||| Sbjct 33688270 AAGTTTGATGACTTAATTGTGCCAAGATTCTGCTGGTTGCTTTTCCTGTTGCAAGAGTCC 33688329 Query 79177 T 79177 | Sbjct 33688330 T 33688330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548431735911120