Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16]
13,573 sequences; 609,203,021 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq19 100 2e-16
seq4 93.3 4e-14
seq9 86.0 5e-12
seq17 84.2 2e-11
seq6 84.2 2e-11
seq3 84.2 2e-11
>seq19
Length=18159812
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| || || || ||||||||||| | ||||| |||| ||||||||
Sbjct 4941092 TGAAGAGTGGACTCCTTCTGGATGTTATAATCGGCCAAAGTTCGACCGTCCTCAAGCTGC 4941033
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
||||| ||||| ||||| | |||||| |||| || | | ||| ||||| ||| ||
Sbjct 4941032 TTGCCAGCAAAGATAAGCCTCTGCTGATCGGGTGGGATACCCTCCTTGTCTTGGATCTTT 4940973
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
||||| | | | || ||| |||||| || | ||||| | ||||| |||
Sbjct 4940972 GCTTTGACATTGTCAATGGTGTCGGAACTCTCCACCTCAAGGGTGATGGTCTTTCCGGTC 4940913
Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284
| || |||||||||||||||||
Sbjct 4940912 AAGGTCTTAACAAAGATTTGCAT 4940890
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || || | ||| || ||| ||| || || || |||||||| || | ||||| |
Sbjct 4941560 CGCAAGACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTTCGACCA 4941501
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| |||||||| ||||| ||||| ||||| | |||||| || | || | | ||| |||
Sbjct 4941500 TCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATACCCTCCTTG 4941441
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
|| ||| || ||||| | | | || || |||||| || | |||||
Sbjct 4941440 TCTTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAACTCTCCACCTCAAGGGTGATT 4941381
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||| |||| || || ||||||||||||||
Sbjct 4941380 GTCTTTCCAGTCAAGGTCTTCACAAAGATTTGCAT 4941346
>seq4
Length=27333975
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || ||| ||| || || || |||||||||||||| ||||| | || ||
Sbjct 3993748 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCAAGGGTTCGGCCATCCTC 3993689
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || ||||| ||||| | ||||||||| | || | || ||| ||||||
Sbjct 3993688 GAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 3993629
Query 39195 GATTTT 39200
||| ||
Sbjct 3993628 GATCTT 3993623
>seq9
Length=21753712
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGT-AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||||| || |||| | || |||||||| || ||| || ||||||||||||||||||||
Sbjct 2445971 CCTCCCCT-AAGCCTCAAGACCAAATGAAGTGTGGATTCCTTTTGTATATTATAATCGGC 2446029
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170
||| || ||| | || || ||||| || || ||||| || || | ||||||||
Sbjct 2446030 AAGAGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTC 2446083
>seq17
Length=21299880
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| || || || || || ||||| || || || |||| ||||||||||| || || ||
Sbjct 4985005 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAG 4984946
Query 39154 ATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| ||||||||||||| ||||||| | | || ||||| ||| || |||| |
Sbjct 4984945 ATGAGACGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 4984887
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | |||||| || || || || | ||||| |||| ||||| || ||||| ||
Sbjct 4984886 GTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCAC 4984827
Query 39273 AAAGATTTGCATC 39285
||||| ||||||
Sbjct 4984826 GAAGATCTGCATC 4984814
>seq6
Length=33111450
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| || || ||||| |||||||| || || || |||| ||||| || || || || ||
Sbjct 5099836 TCCTTCTGGATATTGTAATCGGCGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAG 5099777
Query 39154 ATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| || |||||||||| ||||||| | | || |||||| ||| || |||| |
Sbjct 5099776 ATCAGTCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 5099718
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | || || ||||| || || | || || |||| ||||| || ||||| ||
Sbjct 5099717 GTCGATGGTGTCAGAGGACTCAACCTCGAGGGTTATGGTTTTACCCGTTAGGGTTTTCAC 5099658
Query 39273 AAAGATTTGCATCTT 39287
|||||| ||||||||
Sbjct 5099657 AAAGATCTGCATCTT 5099643
>seq3
Length=30153019
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| || || || || || ||||| || || || |||| ||||||||||| || || ||
Sbjct 15142529 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAG 15142588
Query 39154 ATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
|| ||||||||||||| ||||||| | | || ||||| ||| || |||| |
Sbjct 15142589 ATGAGACGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 15142647
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | |||||| || || || || | ||||| |||| ||||| || ||||| ||
Sbjct 15142648 GTCGATGGTATCGGAGGATTCAACTTCGAGGGTGATGGTTTTCCCCGTTAGGGTTTTCAC 15142707
Query 39273 AAAGATTTGCATC 39285
||||| ||||||
Sbjct 15142708 GAAGATCTGCATC 15142720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429474544164149
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |