Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11 178 1e-39 seq9 178 1e-39 >seq11 Length=35963958 Score = 178 bits (196), Expect = 1e-39 Identities = 400/594 (67%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAA 4598 |||| || || || ||||||||||| | ||||| |||| || | |||| ||||| || Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTC-GCGATATCAACTCGTTTGAG 2850683 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | ||| ||||| | ||||||||| |||||||| |||||||| || ||| Sbjct 2850682 AAGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCA 2850623 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || ||||| || ||||| || |||||||| || | || |||| || || Sbjct 2850622 GAGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAGGA---TTCT 2850566 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 | | ||||| ||| ||||| | |||||| || ||| || || ||||| | Sbjct 2850565 GAACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCA 2850506 Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 | |||| || || |||| ||| | || | ||||| || || | || || Sbjct 2850505 ACCGCGTGGAACAAACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAGA 2850446 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGC 4897 || ||||| |||||||| |||||||| |||||||| || |||||||| |||||| | || Sbjct 2850445 CTGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCA-CGCGC 2850387 Query 4898 TTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 || | ||||| | ||| | ||| ||| | | | |||||| || |||||||| Sbjct 2850386 CTCAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTC 2850327 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT 5017 | ||| || || || || | || || | ||||| ||||| | | || || Sbjct 2850326 AGAGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTCGCCGTCGGTGAGGTT 2850267 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 | ||||||| | | || | || | ||||||||| || | ||||| || || ||||| Sbjct 2850266 CTCCCAGTGGCGGACGTCCTGAGAAAGATCAACTTCCTCGGCGGTCCAGAAAGATGCTTC 2850207 Query 5078 CGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||||| || ||||| ||| || | ||| || ||||| |||| ||| |||| Sbjct 2850206 GGCTTTCTTATACATCTCCCAGATCTGAGGGTATTGAATTGGAAACATG-CAAA 2850154 >seq9 Length=21753712 Score = 178 bits (196), Expect = 1e-39 Identities = 392/582 (67%), Gaps = 7/582 (1%) Strand=Plus/Plus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAA 4600 |||||||| || ||||||||||| | ||||| |||| || | |||| ||||| || || Sbjct 19303914 AATAAACAAGCGAAATCACAATGAAGCCCTTCATCTC-GCGATATCAACTCGTTCGAGAA 19303972 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 || | ||||||||||| || | ||||||||||||||||| || || ||||| Sbjct 19303973 TGTAAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCAGA 19304032 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720 || ||||| ||||| ||| ||||| || || | || |||| || | Sbjct 19304033 GAAAAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAAGGATTCTGAACC 19304092 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 ||| |||||| ||| ||||| | |||||| || |||| || ||||| || | || Sbjct 19304093 GTCG---ATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAAT 19304149 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 |||| |||||| |||| ||| | ||||| ||||| || || | || ||||| Sbjct 19304150 CGCGTGGAATAATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGCT 19304209 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTT 4899 |||||| ||||| || |||||||| || || || || || ||||| |||||| | || | Sbjct 19304210 ATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCA-CGCGCCT 19304268 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 | | ||||||| || | || ||| | | | |||||| || || ||||| Sbjct 19304269 CAGCGACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGG 19304328 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTT 5019 ||| || || || || | | || || |||| |||| || | || | Sbjct 19304329 AGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATCGTCGGTGAGAGAAT 19304388 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 ||| ||| | | ||||| || | ||| |||||||| | ||||| || || ||||| | Sbjct 19304389 CCCAATGGCGAAGATCTTGAGAAAGATCGACTTCTTCGGCGGTCCAGAATGAAGCTTCGG 19304448 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 |||| |||||||| ||| || | ||| || || || |||| Sbjct 19304449 CTTTCTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGAA 19304490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426978957054809