Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16]
13,573 sequences; 609,203,021 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq11 138 1e-27
seq9 122 9e-23
seq2 87.8 2e-12
>seq11
Length=35963958
Score = 138 bits (152), Expect = 1e-27
Identities = 312/465 (67%), Gaps = 7/465 (2%)
Strand=Plus/Minus
Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560
|||| || || || ||||||||||| || |||||||| | ||||| || || || |
Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682
Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGG 23620
| || | ||| ||||| | |||| || |||| ||| ||||| ||| || ||| |
Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCAG 2850622
Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT 23680
| |||||||| || |||||| ||||| || ||||| || | | || | ||| |
Sbjct 2850621 AGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAGG----ATTCT 2850566
Query 23681 -AATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739
|| || ||||| | | ||| | ||| ||| ||||| |||||||||
Sbjct 2850565 GAACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCA 2850506
Query 23740 ATTGCTTTTAAGAGAAAAGTTTTT-TCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798
| || | || | || |||||| || | ||| | |||||||| |||| || |
Sbjct 2850505 ACCGCGTGGAACA-AACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAG 2850447
Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858
||| ||||| |||||||| ||||||||||||||||| || || || || ||| | ||
Sbjct 2850446 ACTGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGC 2850387
Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918
|||| | ||| | ||| | | ||| ||| || | ||||| ||| ||||| ||
Sbjct 2850386 CTCAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTC 2850327
Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 23963
| || || |||||||| || || | ||| | ||| || | |||
Sbjct 2850326 AGAGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTC 2850282
>seq9
Length=21753712
Score = 122 bits (134), Expect = 9e-23
Identities = 309/466 (66%), Gaps = 7/466 (2%)
Strand=Plus/Plus
Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562
|||||||| || ||||||||||| || |||||||| | ||||| || || || |||
Sbjct 19303914 AATAAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAAT 19303973
Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA 23622
|| | || |||||||| || |||||||||| ||||||||| ||| || ||| ||
Sbjct 19303974 GTAAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCAGAG 19304033
Query 23623 AAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT-A 23681
|| || || || ||||| ||||| || || || ||| | || | ||| | |
Sbjct 19304034 AAAAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAA----GGATTCTGA 19304089
Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741
| | |||||| | | ||| | ||| ||| | | ||||| ||| ||||||||
Sbjct 19304090 ACCGTCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAAT 19304149
Query 23742 TGCTTTTAAGAGAAAAGTTTTT-TCTTCATTATCTGTTATATATGTATCAATTAGTAAAC 23800
|| | || | | |||||| || | ||| | |||||||| || | || | |
Sbjct 19304150 CGCGTGGAATA-ATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGC 19304208
Query 23801 TATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTT 23860
||||||| ||||| || ||||||||||| || || || || || || ||| | || |
Sbjct 19304209 TATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCT 19304268
Query 23861 CAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCAC 23920
||| | ||||| | | | | || ||| || | ||||| ||| || || ||
Sbjct 19304269 CAGCGACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGG 19304328
Query 23921 TAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966
|| || ||||| || || | | ||| || || || | ||||||
Sbjct 19304329 AGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATC 19304374
>seq2
Length=24697652
Score = 87.8 bits (96), Expect = 2e-12
Identities = 233/354 (66%), Gaps = 13/354 (4%)
Strand=Plus/Plus
Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560
|||| || || || |||||||| |||| || ||||| | || || || || || |
Sbjct 21046905 ACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 21046964
Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGG 23620
| || | || ||||| | |||||||| || | ||||||||| ||| || ||| |
Sbjct 21046965 AGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCACAGAAGCTTCCAG 21047024
Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT 23680
| ||||||||||| |||||| ||||| || || |||||| | | || | ||| |
Sbjct 21047025 AGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCAGCGAA----GGATTCT 21047080
Query 23681 -AATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA----ATTGT 23735
|| | ||||| | ||| | ||| | ||||| || || || ||
Sbjct 21047081 GAACCGTCGATCCAACGAAGCGCCCACTCAGCTT----TTTTAGCAACGCAAGGTATCGT 21047136
Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAG 23795
|| ||||| | || | | |||| || | |||| | ||||| || |||| ||
Sbjct 21047137 CTCTATTGCGTGGAATAATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAG 21047196
Query 23796 TAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849
| ||||||||| |||||||| ||||| || || || ||||| || || || ||
Sbjct 21047197 GAGACTATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAA 21047250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521399523042200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |