Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lupinus_20angustifolius_20[refseq_20GCF_5F001865875.1_202016-11-16] 13,573 sequences; 609,203,021 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11 138 1e-27 seq9 122 9e-23 seq2 87.8 2e-12 >seq11 Length=35963958 Score = 138 bits (152), Expect = 1e-27 Identities = 312/465 (67%), Gaps = 7/465 (2%) Strand=Plus/Minus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| || || || ||||||||||| || |||||||| | ||||| || || || | Sbjct 2850741 ACAACAAGCAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTTGAGA 2850682 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGG 23620 | || | ||| ||||| | |||| || |||| ||| ||||| ||| || ||| | Sbjct 2850681 AGGTAAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCACAGAAGCTTCCAG 2850622 Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT 23680 | |||||||| || |||||| ||||| || ||||| || | | || | ||| | Sbjct 2850621 AGAAGAAAATTCCTTCAACACAAGCAAACGCAACAAGGCGCTCAGCGAAGG----ATTCT 2850566 Query 23681 -AATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 || || ||||| | | ||| | ||| ||| ||||| ||||||||| Sbjct 2850565 GAACCATCGATCCAACGTAACGCCCACTCAGCTTTCCTCGCAACACAAGGGATTGTTTCA 2850506 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTT-TCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 | || | || | || |||||| || | ||| | |||||||| |||| || | Sbjct 2850505 ACCGCGTGGAACA-AACGGTTTTTATCAGCCGAATCCTTGATATATGTTTCAAGAAGGAG 2850447 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 ||| ||||| |||||||| ||||||||||||||||| || || || || ||| | || Sbjct 2850446 ACTGTACATCTCAGAATGGATATTTTCAATAGCAATTTGGAATCCGTAGAAAGCACGCGC 2850387 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 |||| | ||| | ||| | | ||| ||| || | ||||| ||| ||||| || Sbjct 2850386 CTCAGCGACTTGGATTTCAGTCATAAACCTTCCGGCAAGGTTTTCAAGAACGATACCGTC 2850327 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 23963 | || || |||||||| || || | ||| | ||| || | ||| Sbjct 2850326 AGAGGCGGCGAAGAAAGCGAGGACGTGTTTGACAAAGTGGCGTTC 2850282 >seq9 Length=21753712 Score = 122 bits (134), Expect = 9e-23 Identities = 309/466 (66%), Gaps = 7/466 (2%) Strand=Plus/Plus Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 |||||||| || ||||||||||| || |||||||| | ||||| || || || ||| Sbjct 19303914 AATAAACAAGCGAAATCACAATGAAGCCCTTCATCTCGCGATATCAACTCGTTCGAGAAT 19303973 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAA 23622 || | || |||||||| || |||||||||| ||||||||| ||| || ||| || Sbjct 19303974 GTAAGACCGGGCATTAACCCGCGTTTTTTAAGCCAAAATATCGCACAGAAGCTTCCAGAG 19304033 Query 23623 AAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT-A 23681 || || || || ||||| ||||| || || || ||| | || | ||| | | Sbjct 19304034 AAAAATATTCCTTCAACGCAAGCAAAAGCAACGAGGCGTTCTGCGAA----GGATTCTGA 19304089 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741 | | |||||| | | ||| | ||| ||| | | ||||| ||| |||||||| Sbjct 19304090 ACCGTCGATCCATCGTAACGCCCATTCAGCTTTCTTTGTAACACAAGGAATGGTTTCAAT 19304149 Query 23742 TGCTTTTAAGAGAAAAGTTTTT-TCTTCATTATCTGTTATATATGTATCAATTAGTAAAC 23800 || | || | | |||||| || | ||| | |||||||| || | || | | Sbjct 19304150 CGCGTGGAATA-ATCGGTTTTTATCAGCGGAGTCTTTGATATATGTTTCGAGAAGGAGGC 19304208 Query 23801 TATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTT 23860 ||||||| ||||| || ||||||||||| || || || || || || ||| | || | Sbjct 19304209 TATACATCTCAGAGTGGATATTTTCAATGGCGATTTGGAAGCCGTAGAAAGCACGCGCCT 19304268 Query 23861 CAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCAC 23920 ||| | ||||| | | | | || ||| || | ||||| ||| || || || Sbjct 19304269 CAGCGACTTGAATTTGAGTCATGAACCTTCCGGCGAGGTTTTCAAGAACGATTCCGTCGG 19304328 Query 23921 TAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 || || ||||| || || | | ||| || || || | |||||| Sbjct 19304329 AGGCGGCGAAGAAGGCGAGGATGTGTTTGATGAAGTGGCGTTCATC 19304374 >seq2 Length=24697652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 233/354 (66%), Gaps = 13/354 (4%) Strand=Plus/Plus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| || || || |||||||| |||| || ||||| | || || || || || | Sbjct 21046905 ACAACAAGCACGCGAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 21046964 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGG 23620 | || | || ||||| | |||||||| || | ||||||||| ||| || ||| | Sbjct 21046965 AGGTAAGACCAGGCATAAGGCCTCGTTTCTTCAACCAAAATATCGCACAGAAGCTTCCAG 21047024 Query 23621 AAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT 23680 | ||||||||||| |||||| ||||| || || |||||| | | || | ||| | Sbjct 21047025 AGAAGAAAATACCTTCAACACAAGCAAACGCAACGAGACGTTCAGCGAA----GGATTCT 21047080 Query 23681 -AATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA----ATTGT 23735 || | ||||| | ||| | ||| | ||||| || || || || Sbjct 21047081 GAACCGTCGATCCAACGAAGCGCCCACTCAGCTT----TTTTAGCAACGCAAGGTATCGT 21047136 Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAG 23795 || ||||| | || | | |||| || | |||| | ||||| || |||| || Sbjct 21047137 CTCTATTGCGTGGAATAATCGATTTTTATCAGCGGAATCTTTGATATACGTTTCAAGAAG 21047196 Query 23796 TAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849 | ||||||||| |||||||| ||||| || || || ||||| || || || || Sbjct 21047197 GAGACTATACATCTCAGAATGGATATTCTCGATTGCGATCTGGAAGCCGTAGAA 21047250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521399523042200