Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1241 143 3e-29 seq855 143 3e-29 seq9 118 1e-21 >seq1241 Length=4265459 Score = 143 bits (158), Expect = 3e-29 Identities = 297/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| ||||| || || |||||||||| ||| |||||||| || | Sbjct 519770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 519829 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || || || | ||||||||||||| ||| ||| | Sbjct 519830 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 519889 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | || Sbjct 519890 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 519949 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||| || | |||||| ||| || | | | ||| || || || | Sbjct 519950 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 520006 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || | | || || | ||| | || ||||| |||| || |||| Sbjct 520007 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 520066 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| ||||||||||| || ||||| ||| ||||| | Sbjct 520067 TGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCT 520126 Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | || | || || ||| | || || | | || ||||| || |||||||||||| Sbjct 520127 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCG 520185 Query 17375 CTCGCGGCGAAAAACGC 17391 || ||||| || || Sbjct 520186 GAGGCAGCGAAGAAGGC 520202 >seq855 Length=4499644 Score = 143 bits (158), Expect = 3e-29 Identities = 297/437 (68%), Gaps = 5/437 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| ||||| || || |||||||||| ||| |||||||| || | Sbjct 753876 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 753935 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || || || | ||||||||||||| ||| ||| | Sbjct 753936 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 753995 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| ||| | ||||| || | | ||| || ||| | | | || Sbjct 753996 AGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGC 754055 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||| || | |||||| ||| || | | | ||| || || || | Sbjct 754056 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 754112 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || | | || || | ||| | || ||||| |||| || |||| Sbjct 754113 TCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGC 754172 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| ||||||||||| || ||||| ||| ||||| | Sbjct 754173 TGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCT 754232 Query 17316 CCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 | || | || || ||| | || || | | || ||||| || |||||||||||| Sbjct 754233 CGGCGACCTGGACCTCCTTCATA-AACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCG 754291 Query 17375 CTCGCGGCGAAAAACGC 17391 || ||||| || || Sbjct 754292 GAGGCAGCGAAGAAGGC 754308 >seq9 Length=33717675 Score = 118 bits (130), Expect = 1e-21 Identities = 289/436 (66%), Gaps = 3/436 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| ||||| ||||| || || |||||||||| ||| || ||||| || | Sbjct 737463 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGA 737404 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | |||| || ||||| || || || |||| ||||||||||||| || ||||| Sbjct 737403 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCGCGCAAAAACTCCCAG 737344 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || || ||| | ||||| || | | ||| || ||| | | | | Sbjct 737343 AGAAGAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAGC 737284 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || |||||| || | |||||| ||| || | | | ||| || || || | Sbjct 737283 CGT--CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGA 737227 Query 17196 TGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGC 17255 | || | || | | || || | || | || ||||| |||| || |||| Sbjct 737226 TCGCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGGC 737167 Query 17256 TGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTT 17315 ||||||| |||||||| |||||||| || || ||||| || ||||| ||| ||||| | Sbjct 737166 TGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAGGCGCGGGCCT 737107 Query 17316 CCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | || | || || ||| ||| | | | || ||||| || || || || ||| Sbjct 737106 CGGCGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCCAGGACAATTCCATCGG 737047 Query 17376 TCGCGGCGAAAAACGC 17391 |||||||| || || Sbjct 737046 AAGCGGCGAAGAAGGC 737031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537506880680