Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1241 105 7e-18 seq855 105 7e-18 seq9 82.4 8e-11 >seq1241 Length=4265459 Score = 105 bits (116), Expect = 7e-18 Identities = 295/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||||||||| || | || ||||||| ||| ||||||||||| ||||| | Sbjct 519777 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAG 519836 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 || |||||| || || || || | ||| |||||||| ||| || |||||| |||| Sbjct 519837 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 519895 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATT 16377 | || ||||| || | ||||| || | | ||| |||||| | | | | | | | Sbjct 519896 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGCCGT--- 519952 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || |||||| || | |||| | ||| || | | || || || || || || Sbjct 519953 -CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 520010 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | || | | || || | || | || ||||| || | || | ||||| Sbjct 520011 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 520070 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 ||| || ||||| |||||||| ||||||||||| || || |||||| || ||||| || Sbjct 520071 CATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 520130 Query 16558 TATTTGTACTTCC-ACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||| | |||| | | || || || |||||| ||||| ||||| Sbjct 520131 GACCTGGACCTCCTTCATAAA--CCTCCCAGCGAGATTCTCAAGGACGATGCCGTCGGAG 520188 Query 16616 GCAGCAAAAAACGCCAATATGTGC 16639 ||||| || || || | |||||| Sbjct 520189 GCAGCGAAGAAGGCGAGAATGTGC 520212 >seq855 Length=4499644 Score = 105 bits (116), Expect = 7e-18 Identities = 295/444 (66%), Gaps = 13/444 (3%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||||||||| || | || ||||||| ||| ||||||||||| ||||| | Sbjct 753883 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAG 753942 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGA 16319 || |||||| || || || || | ||| |||||||| ||| || |||||| |||| Sbjct 753943 TCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGC-GCAGAAACTCCCCGAGAAGA 754001 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATT 16377 | || ||||| || | ||||| || | | ||| |||||| | | | | | | | Sbjct 754002 AAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAGCCGT--- 754058 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 || |||||| || | |||| | ||| || | | || || || || || || Sbjct 754059 -CG-ATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGC 754116 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | || | | || || | || | || ||||| || | || | ||||| Sbjct 754117 GTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTA 754176 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 ||| || ||||| |||||||| ||||||||||| || || |||||| || ||||| || Sbjct 754177 CATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGC 754236 Query 16558 TATTTGTACTTCC-ACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||| | |||| | | || || || |||||| ||||| ||||| Sbjct 754237 GACCTGGACCTCCTTCATAAA--CCTCCCAGCGAGATTCTCAAGGACGATGCCGTCGGAG 754294 Query 16616 GCAGCAAAAAACGCCAATATGTGC 16639 ||||| || || || | |||||| Sbjct 754295 GCAGCGAAGAAGGCGAGAATGTGC 754318 >seq9 Length=33717675 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||||||||||||||| || | || ||||||| ||| || ||||| || ||||| | Sbjct 737456 ACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTCAG 737397 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || |||||| || || || |||| ||| |||||||| ||| ||| || ||||| Sbjct 737396 TCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCGCGCAAAAACTCCCAGAGAAGAA 737337 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 || || || || | ||||| || | | ||| |||||| Sbjct 737336 AATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCG 737297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511406402757320