Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq111 91.5 1e-13 seq10 84.2 2e-11 >seq111 Length=1131199 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | ||| ||||| || | | ||||| || ||||| ||||||||| Sbjct 723460 GATAAGGAGGGTATTCCCCCGGATCAGCAGCGGTTGATCTTCGCTGGCAAGCAATTGGAA 723401 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| |||| ||||||||||| || ||||| || ||||| ||| ||||| | Sbjct 723400 GATGGCAGGACTCTGGCGGATTACAATATCCAGAAGGAGTCGACTCTCCACTTGGTGCTG 723341 Query 25248 CGATT 25252 ||||| Sbjct 723340 CGATT 723336 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| || || || || ||| | || |||||| || ||| | |||||||| Sbjct 723246 AAGCAAAAA-TTCAAGACAAGGAGGGTATTCCTCCAGATCAGCAGAGATTGATCTTTGCC 723188 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || || |||||||||||| || ||| |||| |||||||| || |||||||| || ||| Sbjct 723187 GGTAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTACAACATCCAAAAGGAGTCAACT 723128 Query 25233 CTTCACATGGTGTTACGATT 25252 | || |||| | ||||| Sbjct 723127 TTGCATTTGGTCCTTCGATT 723108 >seq10 Length=33391235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || |||||||| ||| | || ||||| || || ||||||||| Sbjct 21109213 GATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 21109272 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| | |||| | || ||||| || || |||||||| || || |||||| |||| || Sbjct 21109273 GATGGCCGAACTCTTGCGGATTATAACATCCAAAAGGAGTCAACACTTCACCTGGTTTT 21109331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410790536760914