Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq111 105 1e-17 seq105 104 4e-17 seq7 104 4e-17 seq4 100 4e-16 seq350 98.7 2e-15 seq317 96.9 5e-15 seq104 96.9 5e-15 seq10 93.3 6e-14 seq12 89.7 8e-13 seq5 87.8 3e-12 >seq111 Length=1131199 Score = 105 bits (116), Expect = 1e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||||||| || || || || | ||| | || Sbjct 723325 ATGCAAATTTTCGTGAAGACCCTAACAGGGAAGACAATTACCCTGGAGGTCGAGAGTTCC 723266 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||| || || ||||| || || ||||| Sbjct 723265 GATACGATTGAYAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGATCAG 723206 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || || ||||| || ||| | | || | | ||||| || Sbjct 723205 CAGAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTACAAC 723146 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||||||||||||||| | || || | |||||||| Sbjct 723145 ATCCAAAAGGAGTCAACTTTGCATTTGGTCCTTCGATTGAGGGGTGGTAT 723096 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/229 (66%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| || || || ||| | ||| | || ||| Sbjct 722869 ATGCAGATWTTTGTGAAGACMCTRACAGGRAAGACGATYACTCTGGAGGTYGAGAGCTC- 722811 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| || ||||| || || || ||||| ||||| || || Sbjct 722810 TGAYACTATTGAYAACGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCGGAYCA 722751 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| || || || | || ||| | | || | | ||||| || Sbjct 722750 GCAGAGATTGATCTTTGCTGGGAARCARYTSGARGATGGYMGKACYCTKGCSGATTAYAA 722691 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || || | || | || | || | | |||||| Sbjct 722690 TATYCAGAARGAGTCTACYCTCCACCTKGTCCTTCGWYTKMGKGGTGGT 722642 >seq105 Length=1713518 Score = 104 bits (114), Expect = 4e-17 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||| ||||||||||||||||| || ||||| ||||||||| |||||||| |||| Sbjct 257750 GAAGATTCAAGATAAAGAAGGAATCCCACCG-----ACAAAGGCTAATTTTTGCTGGAAG 257696 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 || || ||||| | || || | ||||| ||| || || || ||||| || ||||| Sbjct 257695 -CAGTTGGAGGACGGAAAGACTTTGGCAGATTGTAACATCCAGAAGGAATCCACCTTGCA 257637 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| | ||| | ||||||||||| Sbjct 257636 TTTGGTTCTTCGTCTGCGAGGTGGTAT 257610 >seq7 Length=26383534 Score = 104 bits (114), Expect = 4e-17 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||| ||||||||||||||||| || ||||| ||||||||| |||||||| |||| Sbjct 16934975 GAAGATTCAAGATAAAGAAGGAATCCCACCG-----ACAAAGGCTAATTTTTGCTGGAAG 16934921 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 || || ||||| | || || | ||||| ||| || || || ||||| || ||||| Sbjct 16934920 -CAGTTGGAGGACGGAAAGACTTTGGCAGATTGTAACATCCAGAAGGAATCCACCTTGCA 16934862 Query 124742 TTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| | ||| | ||||||||||| Sbjct 16934861 TTTGGTTCTTCGTCTGCGAGGTGGTAT 16934835 >seq4 Length=23020739 Score = 100 bits (110), Expect = 4e-16 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || || ||||| || || || ||| | ||| | || ||| Sbjct 9341456 ATGCARATWTTTGTGAARACMCTRACAGGRAAGACRATYACTCTGGAGGTYGAGAGCTC- 9341514 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| || ||||| || || || ||||| ||||| || || Sbjct 9341515 TGAYACTATTGAYAACGTGAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCGGACCA 9341574 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| || ||||| | |||||| |||| || | | |||||||| Sbjct 9341575 GCAGAGATTGATCTTTGCTGGGAAACAGCTCGAGGATGGTCGTACCCTTGCCGATTATAA 9341634 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||| ||||| || || | || | || | ||| | || |||||| Sbjct 9341635 TATTCAGAAAGAGTCTACCCTCCACCTTGTCCTTCGTCTTCGTGGTGGT 9341683 >seq350 Length=1502417 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||| ||||| || || ||||||||||| || | |||||||| || ||||||| Sbjct 383409 TTCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAACAAT 383350 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| ||||||| | | ||||||||| || || || || ||||| | || ||| Sbjct 383349 TGGAAGATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTGG 383290 Query 124747 TTTT 124750 |||| Sbjct 383289 TTTT 383286 >seq317 Length=1923123 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || ||||| || || || || || || || || ||||| || ||||| ||||| Sbjct 1310996 AAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGAGGCTGATCTTTGCCGGAAAG 1310937 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||| | ||||| ||| |||||||||||||| || || || ||| | || Sbjct 1310936 CAGTTGGAGGATGGCCGAACCCTAGCCGATTATAATATTCAGAAGGAGTCGACTCTCCAC 1310877 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | || || |||| ||||| Sbjct 1310876 TTGGTTCTGCGATTGAGAGGAGGTAT 1310851 >seq104 Length=1555027 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || ||||| || || || || || || || || ||||| || ||||| ||||| Sbjct 784377 AAGATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGAGGCTGATCTTTGCCGGAAAG 784318 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||| | ||||| ||| |||||||||||||| || || || ||| | || Sbjct 784317 CAGTTGGAGGATGGCCGAACCCTAGCCGATTATAATATTCAGAAGGAGTCGACTCTCCAC 784258 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | || || |||| ||||| Sbjct 784257 TTGGTTCTGCGATTGAGAGGAGGTAT 784232 >seq10 Length=33391235 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||||||||| || || ||||||||||| || | |||||||| || || |||| Sbjct 21109208 TTCAGGATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAAT 21109267 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | ||||| | | |||||||| || ||||| || ||||| | || ||| Sbjct 21109268 TGGAAGATGGCCGAACTCTTGCGGATTATAACATCCAAAAGGAGTCAACACTTCACCTGG 21109327 Query 124747 TTTT 124750 |||| Sbjct 21109328 TTTT 21109331 >seq12 Length=31678690 Score = 89.7 bits (98), Expect = 8e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||| ||||| || || ||||||||||| || | |||||||| || || |||| Sbjct 4925888 TTCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAAT 4925829 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 | || ||| ||||||| | | ||||||||| || || || || ||||| Sbjct 4925828 TGGAAGATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAAC 4925780 >seq5 Length=31606955 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| || || || ||||| || || || |||||||| ||||||||||| Sbjct 1684512 AAGATTCAAGATAAGGAGGGCATCCCACCGGACCAGCAGAGGCTTATCTTTGCAGGAAAG 1684571 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || || | | || || || || || ||||| || ||| | ||| Sbjct 1684572 CAGCTCGAGGACGGCCGCACCCTTGCCGACTACAACATCCAGAAAGAGTCCACTCTCCAT 1684631 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | || ||||| || Sbjct 1684632 TTGGTGCTTCGTCTCCGTGGTGGCAT 1684657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755444186556800