Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq350 104 3e-17 seq10 104 3e-17 seq12 96.9 5e-15 >seq350 Length=1502417 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || |||| || | || || || || || ||||||||| Sbjct 383268 GTTCCTCCTCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCT 383327 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || |||||||| || |||||||||||||| || ||||| ||| Sbjct 383328 GCAAGAGTTCGACCATCTTCCAATTGTTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 383387 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 383388 GGGATGCCTTCCTTATCCTG 383407 >seq10 Length=33391235 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | || || || || || |||||||| Sbjct 21109349 GTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATGTTATAATCC 21109290 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || ||||| || ||||||||||||||||| || ||||| ||| Sbjct 21109289 GCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTCTGTTGATCAGGA 21109230 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 21109229 GGGATGCCTTCTTTATCCTG 21109210 >seq12 Length=31678690 Score = 96.9 bits (106), Expect = 5e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || || | || | || || || || || ||||||||| Sbjct 4925747 GTTCCTCCTCTCAGCCTCAAGACMAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCT 4925806 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 4925807 GCAAGAGTTCGACCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 4925866 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 4925867 GGGATGCCTTCCTTATCCTG 4925886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743514773105920