Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1241 129 7e-25 seq855 129 7e-25 seq9 120 4e-22 seq15 107 2e-18 seq486 96.9 4e-15 >seq1241 Length=4265459 Score = 129 bits (142), Expect = 7e-25 Identities = 241/350 (69%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| |||||| ||||| |||||||||| |||||||||| || | |||||| || | Sbjct 519770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 519829 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || ||||| ||||||| || |||||||||||||||||||| | ||| || | Sbjct 519830 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 519889 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33749 | ||||| || || || || ||| |||||||| | | || ||| | | | ||| | Sbjct 519890 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 519948 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 519949 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 520005 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || | ||||| || || || | || || | || || |||| | || Sbjct 520006 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 520065 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || ||||| || || || ||||| |||||||| ||||| || |||||||| Sbjct 520066 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAA 520115 >seq855 Length=4499644 Score = 129 bits (142), Expect = 7e-25 Identities = 241/350 (69%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| |||||| ||||| |||||||||| |||||||||| || | |||||| || | Sbjct 753876 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 753935 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || ||||| ||||||| || |||||||||||||||||||| | ||| || | Sbjct 753936 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCG 753995 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 33749 | ||||| || || || || ||| |||||||| | | || ||| | | | ||| | Sbjct 753996 AGAAGAAAATCCCCTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 754054 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 754055 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 754111 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || | ||||| || || || | || || | || || |||| | || Sbjct 754112 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 754171 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || ||||| || || || ||||| |||||||| ||||| || |||||||| Sbjct 754172 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAA 754221 >seq9 Length=33717675 Score = 120 bits (132), Expect = 4e-22 Identities = 241/351 (69%), Gaps = 10/351 (3%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| |||||| ||||| |||||||||| |||||||||| || | ||||| || | Sbjct 737463 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGA 737404 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || ||||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 737403 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCG-CGCAAAAACTCCCA 737345 Query 33693 GAAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGC 33748 || ||||| || ||||| || ||| |||||||| | | || ||| | | | | | Sbjct 737344 GAGAAGAAAATCCCTTCCAC-GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGA 737286 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 737285 GCCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTC 737229 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || || | ||||| || || || | | ||| || | || || |||| | || Sbjct 737228 GATCGCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAG 737169 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 || ||||| || || || ||||| || || || ||||| || |||||||| Sbjct 737168 GCTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAA 737118 >seq15 Length=47181002 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | || || | |||| |||||||||||||||||| ||| || Sbjct 34780773 TCCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCC 34780832 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || || | ||||| || || ||||| | || ||||||| || ||| || ||| Sbjct 34780833 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 34780892 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| ||||| || || || ||| | || ||| ||| || || ||||| || Sbjct 34780893 GACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 34780952 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 |||||| ||||||||||| ||||| || || || ||||| Sbjct 34780953 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 Score = 82.4 bits (90), Expect = 1e-10 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | ||| |||||||| || || ||||| | ||| | || | Sbjct 34781109 AGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGGTG 34781168 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 || |||| ||| | || || ||||| | ||| ||||| || || | || | ||||| Sbjct 34781169 ATATGTCTTGATAACAGAATCGATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTA 34781227 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||| ||||||||||| |||| |||| | | || || | ||| || | || | Sbjct 34781228 GCATGTGTTGAGGTCTTTCCACAACTTTGCCTTGAACCTTTAAGAGGTAAGACCTCTCAA 34781287 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| || || ||||| || | || |||||| || || ||||| || Sbjct 34781288 GAGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAAATGAT 34781336 >seq486 Length=229640 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 ||| ||| |||||| ||||| | || | ||| || | ||| |||||| ||||||||| Sbjct 170590 CCGCTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGG 170531 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 || ||| || || || | ||||| || || ||||| | || |||| ||||| || Sbjct 170530 AACAATGCCATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTT 170471 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | || | ||| ||||| || || ||| ||| | || ||| |||||| || Sbjct 170470 GTGGACAGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGT 170411 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 ||||| |||||||| ||||||||||| ||| | || || || ||||| Sbjct 170410 ATCATAAATGCCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807751227280