Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 seq1241 120 4e-22 seq855 120 4e-22 seq15 116 5e-21 seq486 105 9e-18 >seq9 Length=33717675 Score = 123 bits (136), Expect = 3e-23 Identities = 237/347 (68%), Gaps = 2/347 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| ||||| |||||||| | |||||||||| || | ||||| || | Sbjct 737463 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGA 737404 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || ||||| ||||||| || |||||||| ||||||||||| | |||||| | ||| Sbjct 737403 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCG-CGCAAAAACTCCCA 737345 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || |||||||| ||||| || |||||||| | | || ||| | || || | Sbjct 737344 GAGAAGAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAG 737285 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| | | ||||| | ||||||||| || || || || || || || Sbjct 737284 CCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATC 737225 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || | ||||| || || || | | ||| || | || || || | | || || Sbjct 737224 GCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGGCTG 737165 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||||| || || || ||||| || || || || || || |||||||| Sbjct 737164 TACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAA 737118 >seq1241 Length=4265459 Score = 120 bits (132), Expect = 4e-22 Identities = 239/350 (68%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| ||||| |||||||| | |||||||||| || | ||||||||| | Sbjct 519770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 519829 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || ||||| ||||||| || |||||||||||||||||||| | |||| || || Sbjct 519830 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 519888 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCA 36325 || |||||||| || || || |||||||| | | || ||| | | | ||| Sbjct 519889 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 519948 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 519949 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 520005 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || || | ||||| || || || | || || | || || || | | || Sbjct 520006 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 520065 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || ||||| || || || ||||| |||||||| || || || |||||||| Sbjct 520066 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAA 520115 >seq855 Length=4499644 Score = 120 bits (132), Expect = 4e-22 Identities = 239/350 (68%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| ||||| |||||||| | |||||||||| || | ||||||||| | Sbjct 753876 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 753935 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || ||||| ||||||| || |||||||||||||||||||| | |||| || || Sbjct 753936 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 753994 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCA 36325 || |||||||| || || || |||||||| | | || ||| | | | ||| Sbjct 753995 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 754054 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 754055 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 754111 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 || || | ||||| || || || | || || | || || || | | || Sbjct 754112 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 754171 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || ||||| || || || ||||| |||||||| || || || |||||||| Sbjct 754172 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAA 754221 >seq15 Length=47181002 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | |||| |||||||||||||||||| ||| || Sbjct 34780773 TCCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCC 34780832 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 |||||| || ||||| || || ||||| || || | ||||| || ||| || ||| Sbjct 34780833 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 34780892 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || || ||| | || ||| ||| || |||||||| || Sbjct 34780893 GACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 34780952 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||| || || |||||||| ||||| || || || ||||| Sbjct 34780953 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 >seq486 Length=229640 Score = 105 bits (116), Expect = 9e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 ||| ||| |||||| ||||| | || | ||| || | ||| |||||| ||||||||| Sbjct 170590 CCGCTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGG 170531 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 || ||| |||||||| || ||||| || || ||||| || || | || ||||| || Sbjct 170530 AACAATGCCATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTT 170471 Query 66326 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 | || | ||| ||||| || || ||| ||| | || ||| |||||| || Sbjct 170470 GTGGACAGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGT 170411 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 |||||| ||||| || || |||||||| ||| | || || || ||||| Sbjct 170410 ATCATAAATGCCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162507822840