Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq699 100 3e-16 seq10 100 3e-16 seq5 91.5 1e-13 >seq699 Length=1873381 Score = 100 bits (110), Expect = 3e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| || || Sbjct 139613 CCACCGCGAAGACGGAGCACCAAGTGGAGGGTTGACTCYTTCTGGATGTTGTAGTCTGCA 139554 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| || ||||| |||||||||| ||||| || || || Sbjct 139553 AGGGTWCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGG 139494 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||||||| Sbjct 139493 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 139434 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 139433 TCAAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAGATTTGCAT 139387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || |||||||| || ||||| || || Sbjct 139842 GCCACCACGAAGACGGAGCACCAAGTGGAGGGTTGACTCTTTCTGGATGTTGTAGTCTGC 139783 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||||||||| || || ||| |||||||||| ||||| || || || Sbjct 139782 AAGGGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGGGG 139723 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 139722 AATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGATGACTCCAC 139663 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || || || || ||||| Sbjct 139662 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 139615 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| || || ||| | || || ||| || ||||| ||||| Sbjct 140039 GTTGACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCTGCCGTCCTCCAGCTGCTTACC 139981 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| | ||||| || || || |||||||| ||||| |||||| || Sbjct 139980 GGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATTTTGGCCTT 139921 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| | ||||||||||| ||| | ||||||||||| | || Sbjct 139920 GACATTGTCAATGGTATCGGATGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGT 139861 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 139860 CTTAACGAAGATCTGCAT 139843 >seq10 Length=33391235 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| || ||||| |||||||||| ||||| || || || || ||||| ||| Sbjct 31310663 TCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTG 31310604 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | | ||||||||||| ||| | Sbjct 31310603 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGATG 31310544 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 31310543 GTCTTGCCGGTAAGAGTTTTCACGAAGATTTGCAT 31310509 >seq5 Length=31606955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| ||||| ||||| || || Sbjct 1683971 GCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGC 1683912 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||||||||| || || || |||| ||||| ||||| || || || Sbjct 1683911 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 1683852 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||| | | |||||| Sbjct 1683851 GATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 1683792 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| ||||| | ||||| || || |||||||| Sbjct 1683791 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCAT 1683744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || || || || ||| Sbjct 1684426 CCACCACGGAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAGTCGGCA 1684367 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| || || ||| |||||| | ||||| || || || Sbjct 1684366 AGGGTCCTGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 1684307 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| |||||| || | | || || |||||| | || || Sbjct 1684306 ATGCCCTCCTTGTCC-TGAATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGAC 1684248 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||||||||| | || || ||||| || ||||| Sbjct 1684247 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1684200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || || | || |||||||| || ||||| || ||| Sbjct 1684655 GCCACCACGGAGACGAAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 1684596 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || || ||| |||| || | ||||| || || || Sbjct 1684595 AAGGGTGCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCCGGTGG 1684536 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 ||||| || || || ||| | || | || | | || | ||||||| | ||||| Sbjct 1684535 GATGCCCTCCTTATCT-TGAATCTTGGCCTTCACGTTGTCTATGGTGTCGGAGCTCTCCA 1684477 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| ||| | ||||| || || | || || ||||| ||||||||| Sbjct 1684476 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACGAAGATTTGCATA 1684427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056242799200