Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1241 152 7e-32 seq855 152 7e-32 seq9 143 4e-29 seq15 125 1e-23 seq486 113 6e-20 seq16 86.0 9e-12 seq13 86.0 9e-12 >seq1241 Length=4265459 Score = 152 bits (168), Expect = 7e-32 Identities = 390/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| ||||| |||||||||| |||||||||| || ||||||||||| | Sbjct 519770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 519829 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||||| || |||||||||||||||||||| | |||| || ||| Sbjct 519830 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 519888 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || || || || ||||||||| || | || ||| | | ||| || | Sbjct 519889 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 519948 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 519949 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 520005 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | ||||| || || || | || || | || || |||| | || Sbjct 520006 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 520065 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || || ||||| |||||||| ||||| || |||||||| | ||| Sbjct 520066 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCC 520125 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | ||| || || | ||| | |||| | ||| ||| || || ||||| Sbjct 520126 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCG 520185 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| || || || || | | || | || || | ||| | | ||| Sbjct 520186 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCC 520245 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | ||| || | ||| || || || || | ||||| || || ||||| Sbjct 520246 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCG 520305 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||||| || ||||| | |||||| || | || ||||| || || ||| Sbjct 520306 GCCTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACATA 520353 >seq855 Length=4499644 Score = 152 bits (168), Expect = 7e-32 Identities = 390/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| ||||| |||||||||| |||||||||| || ||||||||||| | Sbjct 753876 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 753935 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || ||||| ||||||| || |||||||||||||||||||| | |||| || ||| Sbjct 753936 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 753994 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || || || || ||||||||| || | || ||| | | ||| || | Sbjct 753995 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 754054 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 754055 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 754111 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | ||||| || || || | || || | || || |||| | || Sbjct 754112 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 754171 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || || ||||| |||||||| ||||| || |||||||| | ||| Sbjct 754172 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCC 754231 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | ||| || || | ||| | |||| | ||| ||| || || ||||| Sbjct 754232 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCG 754291 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| || || || || | | || | || || | ||| | | ||| Sbjct 754292 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCC 754351 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | ||| || | ||| || || || || | ||||| || || ||||| Sbjct 754352 TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCG 754411 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||||| || ||||| | |||||| || | || ||||| || || ||| Sbjct 754412 GCCTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACATA 754459 >seq9 Length=33717675 Score = 143 bits (158), Expect = 4e-29 Identities = 245/350 (70%), Gaps = 8/350 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| ||||| |||||||||| |||||||||| || || ||||| || | Sbjct 737463 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGA 737404 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC-AAATGACCCA 50070 | || ||||| ||||||| || |||||||| ||||||||||| | ||| ||| |||| Sbjct 737403 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCG-CGCAAAAACTCCCA 737345 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || ||||| || ||||||||| || | || ||| | | ||| | | Sbjct 737344 GAGAAGAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAG 737285 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 737284 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 737228 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | ||||| || || || | | ||| || | || || |||| | || Sbjct 737227 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGG 737168 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || ||||| || || || ||||| || || || ||||| || |||||||| Sbjct 737167 CTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAA 737118 >seq15 Length=47181002 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | |||| |||||||||||||||||| ||| || Sbjct 34780773 TCCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCC 34780832 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || ||||| || || ||||| || || ||||||| || ||| || ||| Sbjct 34780833 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 34780892 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || || ||| | || ||| ||| || |||||||| || Sbjct 34780893 GACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 34780952 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||||||||| ||||| || || || ||||| Sbjct 34780953 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 >seq486 Length=229640 Score = 113 bits (124), Expect = 6e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 80086 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 80145 || ||| |||||| ||||| | || | ||| || | ||| |||||| |||||||||| Sbjct 170589 CGCTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGGA 170530 Query 80146 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 80205 | ||| |||||||| || ||||| || || ||||| || || |||| ||||| || Sbjct 170529 ACAATGCCATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTTG 170470 Query 80206 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 80265 | || | ||| ||||| || || ||| ||| | || ||| |||||| ||| Sbjct 170469 TGGACAGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGTA 170410 Query 80266 TCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||| || ||||||||||| ||| | || || || ||||| Sbjct 170409 TCATAAATGCCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 >seq16 Length=20664393 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||||| |||||||| |||||| || || ||||| || || || | Sbjct 13874191 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 13874250 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056 ||||||||||| || | |||||||||||| ||||||| Sbjct 13874251 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGG 13874287 >seq13 Length=34719086 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||||| |||||||| |||||| || || ||||| || || || | Sbjct 17417189 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 17417248 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056 ||||||||||| || | |||||||||||| ||||||| Sbjct 17417249 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGG 17417285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257568071640