Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq16 89.7 5e-13 seq13 89.7 5e-13 >seq16 Length=20664393 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| |||||||||||| ||||| |||||||| ||||| || Sbjct 13874191 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 13874250 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 || ||||| | ||| | ||||| | ||| ||||| ||| Sbjct 13874251 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGGCA 13874289 >seq13 Length=34719086 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| |||||||||||| ||||| |||||||| ||||| || Sbjct 17417189 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGATATAAGCTCGTTTGAGAATGTCAAC 17417248 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 || ||||| | ||| | ||||| | ||| ||||| ||| Sbjct 17417249 CCGGGCATTAGTCCCCTCTTTTTAAGCCAGAATATGGCA 17417287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479720498253400