Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq111 91.5 1e-13 seq96 82.4 6e-11 seq5 82.4 6e-11 >seq111 Length=1131199 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | ||| ||||||||| | |||||||| | || || | | || ||| Sbjct 723117 ACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTGCCATCTTCC 723176 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 ||||| || |||||||| ||||||| ||| ||||| | || | ||| || || || Sbjct 723177 AATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCCTCCTTGTCTTGA 723236 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| || ||| | |||||| || | || || || || Sbjct 723237 ATTTTTGCTTTCACGTTRTCAATCGTATCGGAACTCTCGACCTCCAGGGTAATTGTCTTC 723296 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || ||||| ||||||||||| Sbjct 723297 CCTGTTAGGGTCTTCACGAAAATTTGCAT 723325 >seq96 Length=1311920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| |||||| || | ||||| |||| | || || |||| || | || Sbjct 515483 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 515424 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 ||||||||||| |||| | || || || | || | |||||| || || |||| Sbjct 515423 TTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 515364 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGT 43085 ||||||| || ||| |||||| ||| | | || || | || || || |||||||| Sbjct 515363 GCTTTGACATTGTCAATGGTGTCGG-AGCTTTCAACCTCGAGGGTGATGGTCTTTCCGGT 515305 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 ||| ||||||||||| || ||||| Sbjct 515304 TAGGGTTTTCACAAAGATCTGCAT 515281 >seq5 Length=31606955 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | |||||| |||| || ||||||||| | ||||| || | Sbjct 1683971 GCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGC 1683912 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | || || ||||| || || | ||||| || || | || Sbjct 1683911 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 1683852 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||| || | | ||||| || ||| || Sbjct 1683851 GATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCAC 1683792 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || ||||||||||| |||||||| Sbjct 1683791 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCAT 1683744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381363785424558