Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 136 5e-27 seq1241 132 6e-26 seq855 132 6e-26 seq15 113 6e-20 seq486 111 2e-19 >seq9 Length=33717675 Score = 136 bits (150), Expect = 5e-27 Identities = 256/374 (68%), Gaps = 2/374 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| ||||| |||||||||| ||||| |||| || | ||||| || | Sbjct 737463 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGA 737404 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 | || ||||| ||||||| || |||||||| ||||||||||| | |||||| | ||| Sbjct 737403 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCG-CGCAAAAACTCCCA 737345 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || ||||| || ||||| || |||||||| | | || ||| | || || | Sbjct 737344 GAGAAGAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAG 737285 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| | | ||||| | ||||||||| || || || || || || || Sbjct 737284 CCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATC 737225 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || | ||||| || || || | | ||| || | || || |||| | || || Sbjct 737224 GCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGGCTG 737165 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || ||||| || || || ||||| || |||||||| | ||||||| Sbjct 737164 TACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCG 737105 Query 42416 GTAACCTGTACTTC 42429 | ||||| || || Sbjct 737104 GCGACCTGGACCTC 737091 >seq1241 Length=4265459 Score = 132 bits (146), Expect = 6e-26 Identities = 258/377 (68%), Gaps = 8/377 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| ||||| |||||||||| ||||| |||| || | ||||||||| | Sbjct 519770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 519829 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || ||||| ||||||| || |||||||||||||||||||| | |||| || || Sbjct 519830 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 519888 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCA 42232 || ||||| || || || || |||||||| | | || ||| | | | ||| Sbjct 519889 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 519948 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 519949 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 520005 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || | ||||| || || || | || || | || || |||| | || Sbjct 520006 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 520065 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || || || ||||| |||||||| ||||| || |||||||| | |||| Sbjct 520066 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCC 520125 Query 42413 TCGGTAACCTGTACTTC 42429 |||| ||||| || || Sbjct 520126 TCGGCGACCTGGACCTC 520142 >seq855 Length=4499644 Score = 132 bits (146), Expect = 6e-26 Identities = 258/377 (68%), Gaps = 8/377 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| ||||| |||||||||| ||||| |||| || | ||||||||| | Sbjct 753876 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 753935 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || ||||| ||||||| || |||||||||||||||||||| | |||| || || Sbjct 753936 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 753994 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCA 42232 || ||||| || || || || |||||||| | | || ||| | | | ||| Sbjct 753995 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 754054 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 754055 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 754111 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || | ||||| || || || | || || | || || |||| | || Sbjct 754112 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 754171 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || || || ||||| |||||||| ||||| || |||||||| | |||| Sbjct 754172 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCC 754231 Query 42413 TCGGTAACCTGTACTTC 42429 |||| ||||| || || Sbjct 754232 TCGGCGACCTGGACCTC 754248 >seq15 Length=47181002 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | |||| |||||||||||||||||| ||| || Sbjct 34780773 TCCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCC 34780832 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| | ||||| || || ||||| || || ||||||| || || || ||| Sbjct 34780833 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 34780892 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || || ||| | || ||| ||| || |||||||| || Sbjct 34780893 GACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 34780952 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||| || || |||||||| ||||| || || || ||||| Sbjct 34780953 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 >seq486 Length=229640 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 ||| ||| |||||| ||||| | || | ||| || | ||| |||||| ||||||||| Sbjct 170590 CCGCTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGG 170531 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 || ||| |||||||| | ||||| || || ||||| || || |||| ||||| || Sbjct 170530 AACAATGCCATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTT 170471 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 | | || | ||| ||||| || || ||| ||| | || ||| |||||| || Sbjct 170470 GTGGACAGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGT 170411 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 |||||| ||||| || || |||||||| ||| | || || || ||||| Sbjct 170410 ATCATAAATGCCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128705060760