Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1241 206 4e-48 seq855 179 5e-40 seq9 178 2e-39 seq439 98.7 1e-15 >seq1241 Length=4265459 Score = 206 bits (228), Expect = 4e-48 Identities = 591/886 (67%), Gaps = 39/886 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| ||| | || || |||||||||||||| ||||| |||||||||| | Sbjct 520351 TGTTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCT 520292 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | |||||| | | | | | Sbjct 520291 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAGGCCCTAT---CCG 520235 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || | ||||||||| | |||||||| || | |||||| || |||| Sbjct 520234 ACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCG 520175 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || || ||||| | || | | || | | ||| | ||| || | |||| || Sbjct 520174 TCCTTGAGAATCTCGCTGGGAGGTTTATGA-AGGAGGT--CCAGGTCGCCGAGGCC-CGC 520119 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| || ||||||||| | ||||| || |||||| || Sbjct 520118 GCCTTCTACGGGTTCCAGATAGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTT 520059 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACA 125349 | || | |||||| || |||| ||| || ||| ||||| |||| ||||||| Sbjct 520058 CTCGAGACGTACATCAAGGACTCCG--ACGAGAAGCACCGCCTCTTCCACGCGATCGACA 520001 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| || |||| | | |||||||| | | | ||| Sbjct 520000 CCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAGT 519941 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||| ||| || || | ||||| || ||| ||| ||||| || ||||| ||||| | Sbjct 519940 CTTT---CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGA 519884 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||| |||| | || |||||||| || |||||||| | ||||| |||||||| | Sbjct 519883 GTTTCTGCG-CGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCC 519825 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 ||||| | || || |||||||||||| | ||||| ||||| || | | |||| Sbjct 519824 AACGAACTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGT----- 519770 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCC--AGCGATGAAAAGGTCATCAACATTGTAACCG 125646 ||| ||| | ||| | ||| | ||||| || ||| | || ||| Sbjct 519769 -ACTCGCTG----CTGAG-GAAGAAGCTGAGCGAGGATCGGGTTAAGTCGATCGTACGGA 519716 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG-GTCAGCATGATTGGC 125705 | || ||| ||| || ||||| | ||| | || ||| || || || | || Sbjct 519715 ACGCGGTGGAGATCGAGAGGGAGTTCGTGTGCGACGCGCTGCCGTGTGCGC-TGGTGGGT 519657 Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 |||||| || | || ||| || |||||| ||||| ||||| ||||| || ||| | | Sbjct 519656 ATGAACGGCGATCTGATGGGCACGTACATCGAGTTCGTGGCGGATCGGCTGCTGGGCTCG 519597 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||| | ||||||| ||||| | | |||| || || |||| ||| ||| |||| Sbjct 519596 TTGGGATACGGCAAGATGTACAATGTCCAGAACCCGTTCGATTGGATG--GAGCTGATCA 519539 Query 125826 --CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 || |||| ||||||||||| || |||||| ||| ||||||| Sbjct 519538 GCCTGCAGGGGAAGACCAACTTCTTYGAGAAGCGCGTCGGCGAGTA 519493 >seq855 Length=4499644 Score = 179 bits (198), Expect = 5e-40 Identities = 400/584 (68%), Gaps = 20/584 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| ||| | || || |||||||||||||| ||||| |||||||||| | Sbjct 754457 TGTTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAGGCCGAGGCCTCCTTCT 754398 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | |||||| | | | | | Sbjct 754397 GGACCGCCGAGGAGGTCGACCTATGCCAGGACATCCGCCACTGGGAGGCCCTAT---CCG 754341 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || | ||||||||| | |||||||| || | |||||| || |||| Sbjct 754340 ACGGCGAGAGGCACTTCGTCTCGCACATTCTCGCCTTCTTCGCTGCCTCCGACGGCATCG 754281 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || || ||||| | || | | || | | ||| | ||| || | |||| || Sbjct 754280 TCCTTGAGAATCTCGCTGGGAGGTTTATGA-AGGAGGT--CCAGGTCGCCGAGGCC-CGC 754225 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||| ||||| || ||||||||| | ||||| || |||||| || Sbjct 754224 GCCTTCTACGGGTTCCAGATAGCCATTGAGAACATCCACTCCGAGATGTACAGCCTCCTT 754165 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACA 125349 | || | |||||| || |||| ||| || ||| ||||| |||| ||||||| Sbjct 754164 CTCGAGACGTACATCAAGGACTCCG--ACGAGAAGCACCGCCTCTTCCACGCGATCGACA 754107 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | | || | | || ||||| || |||| | | |||||||| | | | ||| Sbjct 754106 CCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCCGAGT 754047 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||| ||| || || | ||||| || ||| ||| ||||| || ||||| ||||| | Sbjct 754046 CTTT---CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGA 753990 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||| |||| | || |||||||| || |||||||| | ||||| |||||||| | Sbjct 753989 GTTTCTGCG-CGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCC 753931 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| | || || |||||||||||| | ||||| ||||| || Sbjct 753930 AACGAACTGATCTCGCGAGACGAGGGCTTGCACTGCGACTTCGC 753887 >seq9 Length=33717675 Score = 178 bits (196), Expect = 2e-39 Identities = 581/884 (66%), Gaps = 33/884 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | ||| || |||||||||||||| ||||| | |||||||| | Sbjct 736882 TGTTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCT 736941 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | ||||| ||| | | | Sbjct 736942 GGACCGCCGAGGAGGTCGACCTTTGCCAGGACGTCCGCCACTGGGAAGCTCTAT---CCG 736998 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | || | |||||||| | |||||||| |||| ||||||||||| | Sbjct 736999 ACGGCGAGAGGCACTTCGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTG 737058 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTG 125233 || || ||||| | | ||| | ||| | ||| || | |||| || | Sbjct 737059 TCCTGGAGAATCTCGCCGGAAGGTTCATGAAGGAGGT--CCAGGTCGCCGAGGCC-CGCG 737115 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| ||| || |||||| | ||||| || |||||| || Sbjct 737116 CCTTCTACGGGTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTC 737175 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | || | |||||| ||| | | || ||| ||||| |||| |||||||| Sbjct 737176 TCGAGACGTACATCAAGGATTCTGACGAGAAGCACCGCCTCTTCCACGCGATCGACACCA 737235 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | || | | || ||||| || |||| | | |||||||| | | |||||| Sbjct 737236 TCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGACGGCTCTGAGTCTT 737295 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 ||| || || | ||||| || ||| ||| || || || ||||| || || |||| Sbjct 737296 T---CGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGTT 737352 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 || || || |||||||| || |||||||| | ||||| |||||||| | |||| Sbjct 737353 TTTGCGCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAACG 737412 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCGCAAC 125591 || | || || |||||||||||| | ||||| ||||| || | | |||| |||| | Sbjct 737413 AGCTGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGCGTGTTTGCTGTACTCGCTA- 737471 Query 125592 TATCTGCGTCCCGAGTGCAGATCCAGCGAT--GAAAAGGTC-ATCAACATTGTAACCGAT 125648 ||| | | || || || | || ||| || || ||| || | | | ||| Sbjct 737472 ---CTGAG-GCAGA-AGCTGAGCGAG-GATCGGATAAAGTCGAT--AGTTCGGAAC---- 737519 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || ||| ||| || | ||||| | ||| | || || | | || | || ||| Sbjct 737520 GCGGTGGAGATCGAGAAGGAGTTCGTGTGCGACGCGCTGCCTTGCGCCCTGGTGGGGATG 737579 Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||| | | || ||| || ||||| ||||| || |||||||| || ||| || |||| Sbjct 737580 AACGGTGATCTGATGAGCACCTACATCGAGTTCGTCGCAGATCGGCTGCTGGGCGCGTTG 737639 Query 125769 ATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA--C 125826 | | || || ||||||| | |||| || || |||| ||| ||| |||| | Sbjct 737640 GGATACGGGAAAATGTACAACGTCCAGAACCCTTTCGATTGGATG--GAGCTGATCAGCC 737697 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| ||||||||||| |||||||| ||| |||||||| Sbjct 737698 TCCAGGGGAAGACCAACTTCTTCGAGAAACGCGTCGGCGAGTAC 737741 >seq439 Length=4537371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | ||| || |||||||||||||| ||||| | |||||||| | Sbjct 763516 TGTTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCTCCTTCT 763457 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || | | ||||| | | | ||||| ||| | | | Sbjct 763456 GGACAGCCGAGGAGGTCGACCTTTGCCAGGACGTCCGCCACTGGGAAGCTC---TATCCG 763400 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||| | | ||| | |||||||| | |||||||| |||| ||||||||||| | Sbjct 763399 ACGGCGAGAGGCACTTTGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCCGATGGAATTG 763340 Query 125176 TCAACGACAATCT 125188 || || ||||| Sbjct 763339 TCCTGGAGAATCT 763327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047611686760