Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq111 100 2e-16 seq317 91.5 1e-13 seq104 91.5 1e-13 seq931 89.7 4e-13 seq275 89.7 4e-13 seq5 86.0 5e-12 seq96 82.4 6e-11 >seq111 Length=1131199 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||||| | || ||||| | || || || ||||| ||||||||||| Sbjct 723099 CCACCCCTCAATCGAAGGACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCC 723158 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | ||||| ||||| || || || | ||||| | || || || ||| Sbjct 723159 AGAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 723218 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || ||||| || ||||||| || || | || || |||||| | | || || Sbjct 723219 ATACCCTCCTTGTCTTGAATTTTTGCT-TTCACGTTRTCAATCGTATCGGAACTCTCGAC 723277 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||| || || ||||| || || || || |||||||||||| Sbjct 723278 CTCCAGGGTAATTGTCTTCCCTGTTAGGGTCTTCACGAAAATTTGCATA 723326 >seq317 Length=1923123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || || || | || || || ||||| ||||||||||| Sbjct 1310624 TGCCACCTCTCAGACGCAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCG 1310683 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | || |||| || ||||| || |||||| | ||||| | || ||||| || Sbjct 1310684 CCAAAGTCCTTCCGTCCTCCAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 1310743 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| || || || || ||| ||| ||| | || |||||||| | || | Sbjct 1310744 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCGA 1310803 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || || || || || || || ||||| |||||||| |||||| Sbjct 1310804 CCTCGAGAGTKATTGTCTTCCCCGTTAGGGTTTTGACAAAAATCTGCATA 1310853 >seq104 Length=1555027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || || || | || || || ||||| ||||||||||| Sbjct 784005 TGCCACCTCTCAGACGCAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCG 784064 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | || |||| || ||||| || |||||| | ||||| | || ||||| || Sbjct 784065 CCAAAGTCCTTCCGTCCTCCAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 784124 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||| || || || || ||| ||| ||| | || |||||||| | || | Sbjct 784125 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCGA 784184 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | || || || || || || || ||||| |||||||| |||||| Sbjct 784185 CCTCGAGAGTTATTGTCTTCCCCGTTAGGGTTTTGACAAAAATCTGCATA 784234 >seq931 Length=1020267 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/204 (67%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || |||||||| ||| || | | | || || | || Sbjct 505866 TGSAGRGTGGACTCCTTYTGWATGTTGTAGTCGGCRAGKGTSCKKCCRTCCTCAAGCTGC 505925 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | |||| | ||| ||||| ||||| || || ||||| || ||| Sbjct 505926 TTGCCWGCAAAGATCARCCTTTGYTGGTCTGGGGGAATGCCCTCCTTGTCYTGGATYTTG 505985 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || || || || |||| || || | ||| |||||||| || ||| Sbjct 505986 GCYTTSACATTATCAATWGTRTCAGARCTTTCAACYTCKAGGGTRATGGTTTTTCCAGTC 506045 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | || || ||||| ||||||||| Sbjct 506046 AAGGTYTTCACAAAGATTTGCATA 506069 >seq275 Length=2000977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | ||| | || || || || Sbjct 275274 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTCCCATCCTCCAACTGC 275333 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||| | || ||||| || || ||||| ||||| ||| || Sbjct 275334 TTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTA 275393 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | || || || ||||| ||||| || |||||| Sbjct 275394 GCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGTC 275453 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | || || || || || |||||| Sbjct 275454 AAGGTCTTCACGAAGATCTGCATA 275477 >seq5 Length=31606955 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | || | || || || || Sbjct 1685086 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAGGGTCCTTCCATCCTCCAACTGC 1685027 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | ||||| | || ||||| ||||| || || ||||| || ||| Sbjct 1685026 TTACCAGCRAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTT 1684967 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| || | || || || ||||| ||||| || ||||| Sbjct 1684966 GC-CTTCACATTGTCGATGGTGTCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTGT 1684908 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || |||||| Sbjct 1684907 CAAGGTCTTCACAAAGATCTGCATA 1684883 >seq96 Length=1311920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || |||||||| ||| || | || |||| || | || Sbjct 515712 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTCCTTCCGTCCTCGAGCTG 515653 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| || | ||||| | || ||||| || || || || ||||| ||||| Sbjct 515652 CTTGCCTGCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTT 515593 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || || ||| |||| || || || |||||||| || || || Sbjct 515592 AGCCTTAACATTGTCAATAGTGTCGGAGCTTTCCACTTCCAAAGTAATGGTCTTCCCGGT 515533 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || ||||||||| Sbjct 515532 AAGGGTCTTGACGAAGATTTGCATA 515508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362173678012191