Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq111 104 2e-17 seq296 93.3 4e-14 seq317 91.5 1e-13 seq104 91.5 1e-13 >seq111 Length=1131199 Score = 104 bits (114), Expect = 2e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || ||||||||||| || ||||||||||||| || || | || ||| Sbjct 723117 ACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTGCCATCTTCC 723176 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || ||||| ||| | || | |||||||||||| || | ||||| ||||| | Sbjct 723177 AATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCCTCCTTGTCTTGA 723236 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | | |||||| | ||| || | |||||| || || Sbjct 723237 ATTTTTGCTTTCACGTTRTCAATCGTATCGGAACTCTCGACCTCCAGGGTAATTGTCTTC 723296 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||||| || || || ||||||||||| Sbjct 723297 CCTGTTAGGGTCTTCACGAAAATTTGCAT 723325 >seq296 Length=1448965 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || ||||||||||| | || | ||||||||||||| ||||| Sbjct 596804 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTTCCGTCCTCCAGCTGCTTACCG 596863 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| | || ||||||||||| ||| || | |||||| ||||| Sbjct 596864 GCAAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 596907 >seq317 Length=1923123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| |||||||||||||| || ||||||||||||| || | |||||||| Sbjct 1310644 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCGCCAAAGTCCTTCCGTCCTCC 1310703 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || ||||| || |||| | ||||||||| || || | ||||| || || Sbjct 1310704 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 1310763 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTT 19009 || || || || | ||| |||| ||| |||| || |||| || || || Sbjct 1310764 ATCTTGGCCTTCACATTATCGATGGTAT---CAGAGCTCTCGACCTCGAGAGTKATTGTC 1310820 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||| |||||||||||||| ||||| Sbjct 1310821 TTCCCCGTTAGGGTTTTGACAAAAATCTGCAT 1310852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || || | ||| | ||| | ||| | || |||||||| || || || ||||||| Sbjct 1310396 TTCCACCACGAAGCCTGAGCACRAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCCG 1310455 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | ||||||| || || || ||| | || || |||||||||||| | Sbjct 1310456 CCAGGGTCCGGCCATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGAG 1310515 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| ||| ||| || || | | | | ||||||| | ||| Sbjct 1310516 GAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATAGTATCGGAACTCTCGA 1310575 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || | || || || ||||||||||| Sbjct 1310576 CCTCCAGAGTTATGGTCTTCCCGGTAAGGGTCTTCACGAAAATTTGCAT 1310624 >seq104 Length=1555027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| |||||||||||||| || ||||||||||||| || | |||||||| Sbjct 784025 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCGCCAAAGTCCTTCCGTCCTCC 784084 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || ||||| || |||| | ||||||||| || || | ||||| || || Sbjct 784085 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 784144 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTT 19009 || || || || | ||| |||| ||| |||| || |||| || || || Sbjct 784145 ATCTTGGCCTTCACATTATCGATGGTAT---CAGAGCTCTCGACCTCGAGAGTTATTGTC 784201 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||| |||||||||||||| ||||| Sbjct 784202 TTCCCCGTTAGGGTTTTGACAAAAATCTGCAT 784233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414566479189894