Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq317 96.9 2e-15 seq104 93.3 3e-14 >seq317 Length=1923123 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||| | ||||| || || || ||| || ||||||||||||||| Sbjct 1310853 ACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCGGC 1310912 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| ||||| || ||||| ||||| |||| || ||||||||| | || Sbjct 1310913 TAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGG 1310972 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || ||||| || || ||||| | ||| ||| || | |||||| Sbjct 1310973 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCCAC 1311032 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || ||||||| || || || || || ||||| Sbjct 1311033 TTCCAGAGTAATCGTMTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1311080 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAA 43988 |||||| || || |||||||| | || | || |||| || | ||||| || |||| Sbjct 1310205 CTCTTTCTGGATGTTATAATC-TGCAAGGGTGCGACCATCCTCAAGCTGTTTCCCAGCAA 1310263 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | |||| || ||||||||| | || | ||||| ||||| || || |||||| Sbjct 1310264 AGATCAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGGATCTTAGCTTTGACAT 1310323 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| ||| || | ||| || || | ||||||||||| || |||| ||||||| Sbjct 1310324 TATCAATAGTGTCGGAGCTCTCAACCTCCAGGGTAATTGTTTTCCCTGTTAGGGTCTTCA 1310383 Query 44109 CAAATATTTGCAT 44121 ||||||| ||||| Sbjct 1310384 CAAATATCTGCAT 1310396 >seq104 Length=1555027 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||||| | ||||| || || || ||| || ||||||||||||||| Sbjct 784234 ACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCGGC 784293 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||| ||||| || ||||| ||||| |||| || ||||||||| | || Sbjct 784294 TAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGG 784353 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || ||||| || || ||||| | ||| ||| || | |||||| Sbjct 784354 AATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGAGCTCTCCAC 784413 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || ||||||| || || || || || ||||| Sbjct 784414 TTCCAGAGTAATCGTCTTCCCGGTTAGGGT-TTRACGAAGATCTGCAT 784460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354772190861148