Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq350 89.7 4e-13 seq111 86.0 5e-12 seq10 84.2 2e-11 >seq350 Length=1502417 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 |||||||| ||||||||| | |||||| |||| || || || || || || || ||| Sbjct 383259 TTTATCATAGTTCCTCCTCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATG 383318 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || ||||| | | |||| | ||||||||||||||| || ||| |||| | |||||| Sbjct 383319 TTATAATCTGCAAGAGTTCGACCATCTTCCAATTGTTTACCGGCAAAAATCAATCTCTGT 383378 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | |||||| || || Sbjct 383379 TGATCAGGAGGGATGCCTTCCTTATC 383404 >seq111 Length=1131199 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | || || || ||||| ||||||||||| ||| ||| | ||||||| Sbjct 723117 ACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCCAGAGTCCTGCCATCTTCC 723176 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| | || | ||||| ||||| || | || || ||||| | Sbjct 723177 AATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCCTCCTTGTCTTGA 723236 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 |||||| |||||| | ||| | |||| | || |||| |||||| || || Sbjct 723237 ATTTTTGCTTTCACGTTRTCAATCGTATCGGAACTCTCGACCTCCAGGGTAATTGTCTTC 723296 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | || || || ||||||||||| Sbjct 723297 CCTGTTAGGGTCTTCACGAAAATTTGCAT 723325 >seq10 Length=33391235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| ||||||| | | |||||| |||| || ||||| || || ||||| ||| Sbjct 21109358 TTAATCATAGTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGTGTTGACTCCTTTTGGATG 21109299 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || ||||| | | |||| |||||||||||| || || ||| |||| | |||||| Sbjct 21109298 TTATAATCCGCAAGAGTTCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTCTGT 21109239 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||| || Sbjct 21109238 TGATCAGGAGGGATGCCTTCTTTATC 21109213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419580802737531