Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq699 104 2e-17 seq5 104 2e-17 seq673 95.1 1e-14 seq325 93.3 4e-14 seq13 93.3 4e-14 seq1167 91.5 1e-13 seq449 91.5 1e-13 seq17 91.5 1e-13 seq777 89.7 4e-13 seq324 87.8 2e-12 seq275 87.8 2e-12 seq12 86.0 5e-12 seq104 84.2 2e-11 >seq699 Length=1873381 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | | | ||| ||||| || || |||||| || |||||||| ||||| Sbjct 140070 ACCACCGCGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 140011 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 | ||| || |||||||||||||||||||| | | || || | |||||| || Sbjct 140010 TAGG-GTC-CTGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGG 139953 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCC 48676 || | | ||||||||| ||||| ||||| | | |||||||||| |||||| Sbjct 139952 GGAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTGTCAATGGTATCGGATGACTCC 139893 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || |||||||| || || || || |||||||| Sbjct 139892 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 139843 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || || ||| || || |||||||| || || || || || | || | Sbjct 139596 CACCAAGTGGAGGGTTGACTCYTTCTGGATGTTGTAGTCTGC-AAGGGTWCGGCCATCTT 139538 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || || | || | ||||||||| ||| || | | |||||||||| Sbjct 139537 CGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCT 139478 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||||| | | || ||||| || | |||||| ||| | || ||||| Sbjct 139477 GGATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGATGACTCCACCTCAAGGGTGATGGT 139420 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||||||||| || || |||||| Sbjct 139419 CTTGCCGGTAAGAGTTTTCACGAAGATTTGCATC 139386 >seq5 Length=31606955 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || ||||||||| |||||||| || || | ||| |||| || Sbjct 1683953 CACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCTTC 1683894 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | ||||||||| || || | | |||||||||| Sbjct 1683893 GAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATCCCTTCCTTGTCCTG 1683834 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| || | ||||||| ||| | || ||||| Sbjct 1683833 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTC 1683776 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| ||||||||||| || |||||| Sbjct 1683775 TTTCCGGTGAGGGTTTTCACAAAGATTTGCATC 1683743 >seq673 Length=4704030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || ||| | |||||||||||||||| ||| || Sbjct 4141945 CTCCTTCTGGATGTTGTAGTCGGC-AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGA 4141887 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 4141886 AGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 4141827 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| |||||| ||| | ||||| || || || || || ||||||| Sbjct 4141826 TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCA 4141767 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 4141766 CGAAGATCTGCATC 4141753 >seq325 Length=8951201 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 8316239 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGC 8316180 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| ||| | | ||||||||| || || Sbjct 8316179 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 8316120 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| |||| |||||| ||| | ||||| || || || || Sbjct 8316119 GCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTT 8316060 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 8316059 AGGGTTTTCACGAAGATCTGCATC 8316036 >seq13 Length=34719086 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 8292201 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGC 8292260 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| ||| | | ||||||||| || || Sbjct 8292261 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 8292320 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| |||| |||||| ||| | ||||| || || || || Sbjct 8292321 GCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTT 8292380 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 8292381 AGGGTTTTCACGAAGATCTGCATC 8292404 >seq1167 Length=79491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| ||||||| || |||| || |||||||| ||| || | Sbjct 64088 CCTTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAG 64147 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||| ||| ||| | | ||||||||| || || ||||| | Sbjct 64148 ATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 64207 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||||||| | ||| ||| | || ||||| || ||||| || |||||||| Sbjct 64208 TCGATGGTATCGCTGCTCTCGACCTCAAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACG 64267 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 64268 AAAATCTGCATC 64279 >seq449 Length=2648660 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 2148504 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAA 2148563 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 2148564 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 2148623 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||| | ||||| || || || || || |||||||| Sbjct 2148624 GTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTTTTCAC 2148683 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 2148684 GAAGATCTGCATC 2148696 >seq17 Length=24923725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 24420848 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAA 24420907 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 24420908 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 24420967 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||| | ||||| || || || || || |||||||| Sbjct 24420968 GTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTCAGGGTTTTCAC 24421027 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 24421028 GAAGATCTGCATC 24421040 >seq777 Length=131708 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| ||||||| || |||| || |||||||| ||| || | Sbjct 69226 CCTTTCTGKATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTKCCGGCGAAG 69285 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||| ||| ||| | | ||||||||| || || ||||| | Sbjct 69286 ATGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 69345 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| ||| | ||| ||| | || ||||| || ||||| || |||||||| Sbjct 69346 TCGATGGTRTCGCTGCTCTCGACCTCRAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACG 69405 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 69406 AAAATCTGCATC 69417 >seq324 Length=8003036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| | | || | Sbjct 1599006 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCTGGCGAA 1598947 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 1598946 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 1598887 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| |||||| ||| | ||||| || || || || || |||||||| Sbjct 1598886 GTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 1598827 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 1598826 GAAGATCTGCATC 1598814 >seq275 Length=2000977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| ||||||||||||||||||| | | | ||||||| |||| Sbjct 275274 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTCCCATCCTCCAACTGC 275333 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||| || | |||||| ||| || | | |||||||||| ||| || Sbjct 275334 TTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTA 275393 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | |||| ||| | || ||||| || || || Sbjct 275394 GCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGTC 275453 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| Sbjct 275454 AAGGTCTTCACGAAGATCTGCAT 275476 >seq12 Length=31678690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| ||||| | ||| |||| || |||||||| ||| || | Sbjct 2679453 CCTTTCTGGATGTTGTAGTCAGCTAGGGTTCGGCCGTCTTCGAGCTGCTTGCCGGCGAAG 2679512 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||| ||| || | | ||||||||| || || ||||| | Sbjct 2679513 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 2679572 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 |||| || ||| | ||| ||||| || ||||| || ||||| || |||||||| Sbjct 2679573 TCTATAGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACG 2679632 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 2679633 AAAATCTGCATC 2679644 >seq104 Length=1555027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTGCTTACCGCCGT 48593 ||||||||| ||||||||||| ||||| ||| | ||||||||| |||||||| || Sbjct 784042 CTCCTTTTGGATGTTGTAATCCGCCAA-AGTCCTTCCGTCCTCCAATTGCTTACCAGCGA 784100 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| || | |||||| || || | | ||||| ||| || || ||| | | Sbjct 784101 AAATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTCACAT 784160 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | |||||||| | ||| ||||| ||||| || || || || || ||||| | Sbjct 784161 TATCGATGGTATCAGAGCTCTCGACCTCGAGAGTTATTGTCTTCCCCGTTAGGGTTTTGA 784220 Query 48714 CAAAAATCTGCAT 48726 ||||||||||||| Sbjct 784221 CAAAAATCTGCAT 784233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244777367251