Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq15 113 2e-20 seq12 111 8e-20 seq1131 107 1e-18 seq14 107 1e-18 seq6 107 1e-18 seq17 105 3e-18 seq656 104 1e-17 seq2 104 1e-17 seq117 102 4e-17 seq9 102 4e-17 seq352 100 1e-16 seq204 96.9 2e-15 seq5 96.9 2e-15 seq1094 93.3 2e-14 seq8 93.3 2e-14 seq1 93.3 2e-14 >seq15 Length=47181002 Score = 113 bits (124), Expect = 2e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 21262835 AAAAAAMAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 21262894 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 21262895 CTCTAACCAGCTGAGCTAATAGGCC 21262919 Score = 111 bits (122), Expect = 8e-20 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||| || | || | ||| ||||||||||||| | | |||||||| ||||||||| Sbjct 17933032 AAATAATGACTAAAAAGAAAGGAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 17933091 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||||||||||| |||| |||||||||| |||||| Sbjct 17933092 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCGT 17933134 >seq12 Length=31678690 Score = 111 bits (122), Expect = 8e-20 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 8113465 AAAACAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 8113524 Query 11506 TCTRACCAACTGAGCTAATGGGCC-GTCGACGATT 11539 ||| ||||||||||||||| |||| || || |||| Sbjct 8113525 TCTAACCAACTGAGCTAATAGGCCAGTTGATGATT 8113559 Score = 107 bits (118), Expect = 1e-18 Identities = 81/95 (85%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || ||||||||||| || ||||||||| | | |||||||| ||||||||||||||| Sbjct 14351383 AAATAATAAAAAATATGTAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 14351442 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 14351443 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 14351477 >seq1131 Length=978915 Score = 107 bits (118), Expect = 1e-18 Identities = 81/95 (85%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 || ||||||||||| || ||||||||| | | |||||||| ||||||||||||||| Sbjct 696663 AAATAATAAAAAATATGTAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 696604 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 696603 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 696569 >seq14 Length=29158859 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 26701185 AATAAAAAA---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 26701241 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 26701242 GACGCTCTAACCAGCTGAGCTAATAGGCC 26701270 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 25794456 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 25794515 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25794516 TGAGCTAATAGGCC 25794529 >seq6 Length=25473135 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 22184193 TAAAACAAGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 22184134 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||| |||||||||| ||||| Sbjct 22184133 CGCTCTAACCAGCTGAGCTAATAGGCCG 22184106 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 21122342 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 21122283 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| |||||||||| |||| Sbjct 21122282 CCAGCTGAGCTAATAGGCC 21122264 Score = 82.4 bits (90), Expect = 4e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11460 CCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 ||||| | | || ||||| |||||||||||||||||||||||||||| |||| ||||| Sbjct 22187816 CCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACGACGCTCAAACCAGCTGAG 22187757 Query 11520 CTAATGGGCCGT 11531 ||||| ||| || Sbjct 22187756 CTAATAGGCTGT 22187745 >seq17 Length=24923725 Score = 105 bits (116), Expect = 3e-18 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 5035031 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5035090 Query 11512 CAACTGAGCTAATGGGCCGT 11531 || |||||||||| |||||| Sbjct 5035091 CAGCTGAGCTAATAGGCCGT 5035110 >seq656 Length=8273961 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 4272371 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 4272428 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 4272429 CTCTAACCAGCTGAGCTAATAGGCC 4272453 >seq2 Length=36374806 Score = 104 bits (114), Expect = 1e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 10962333 ATTAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 10962392 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||| |||||||||| |||| Sbjct 10962393 AACCAGCTGAGCTAATAGGCC 10962413 >seq117 Length=1953078 Score = 102 bits (112), Expect = 4e-17 Identities = 79/93 (85%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 240684 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 240625 Query 11516 TGAGCTAATGGGCCGTCGACGATTG--TGATTT 11546 ||||||||| |||| |||||| | |||||| Sbjct 240624 TGAGCTAATAGGCC--AGACGATCGGATGATTT 240594 >seq9 Length=33717675 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 4397269 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4397328 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 4397329 CAGCTGAGCTAATAGGCC 4397346 >seq352 Length=1517092 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 399607 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 399548 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 399547 AGCTGAGCTAATAGGCC 399531 >seq204 Length=451819 Score = 96.9 bits (106), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||| ||||||| | | |||||||| |||||||||||||||||||| Sbjct 106509 AAAAAAAAAAGAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 106567 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 106568 GACGCTCTAACCAGCTGAGCTAATAGGCC 106596 >seq5 Length=31606955 Score = 96.9 bits (106), Expect = 2e-15 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| | |||| |||| ||||||| | | |||||||| |||||||||||||||| Sbjct 5662762 AAATAAGACAAAAAGAAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTA 5662704 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| |||| |||||||||| ||||| Sbjct 5662703 GCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 5662670 >seq1094 Length=2647096 Score = 93.3 bits (102), Expect = 2e-14 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| |||| |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 318110 AAAACAAAATGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 318169 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 318170 CTCTAACCAGCTGAGCTAATAGGCC 318194 >seq8 Length=29603939 Score = 93.3 bits (102), Expect = 2e-14 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| ||||||| | | |||||||| |||||||||||||||||||| Sbjct 4562507 AAAAAAAAAAGRAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 4562565 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 4562566 GACGCTCTAACCAGCTGAGCTAATAGGCC 4562594 >seq1 Length=29289779 Score = 93.3 bits (102), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 26710311 AAAAAGGGAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 26710252 Query 11505 CTCTRACCAACTGAGCTAATGGGCC-GTCGACGAT 11538 |||| |||| |||||||||| |||| || || ||| Sbjct 26710251 CTCTAACCAGCTGAGCTAATAGGCCAGTTGATGAT 26710217 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261487213158076