Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1241 152 1e-32 seq13 149 2e-31 seq376 91.5 4e-14 >seq1241 Length=4265459 Score = 152 bits (168), Expect = 1e-32 Identities = 226/318 (71%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 19323 CTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAG-CTGCTACTACTTG 19381 ||||| | || |||||||| || | ||||| |||| ||| | | | || ||| || Sbjct 4250736 CTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTGT 4250678 Query 19382 CTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGT 19441 ||||| | || || || || ||||| || ||||||| ||||| || ||||| || || Sbjct 4250677 ATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGT 4250618 Query 19442 TTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAA 19501 ||| || || ||| | || |||| ||||||||||| | | || | |||| | || Sbjct 4250617 TTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGC 4250558 Query 19502 TGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATA 19561 || ||||| |||||||||| || || |||||||| || | ||||| |||||||| Sbjct 4250557 AGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATA 4250498 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 ||| || ||||| ||| | || |||| | ||||||||| | || ||||| |||| Sbjct 4250497 CAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGT 4250438 Query 19622 TGGTAGACAGTGGGAACT 19639 ||| | |||||||||| Sbjct 4250437 GGGTCGTGAGTGGGAACT 4250420 >seq13 Length=34719086 Score = 149 bits (164), Expect = 2e-31 Identities = 225/318 (71%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 19323 CTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAG-CTGCTACTACTTG 19381 ||||| | || |||||||| || | ||||| |||| ||| | | | || ||| || Sbjct 21513239 CTTTACATTGGATGGTTTGGTGTTTTGATGAT-CCTTACTTTATTGACCGCAACTTCTGT 21513297 Query 19382 CTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGT 19441 ||||| | || || || | ||||| || ||||||| ||||| || ||||| || || Sbjct 21513298 ATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGT 21513357 Query 19442 TTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAA 19501 ||| || || ||| | || |||| ||||||||||| | | || | |||| | || Sbjct 21513358 TTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGC 21513417 Query 19502 TGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATA 19561 || ||||| |||||||||| || || |||||||| || | ||||| |||||||| Sbjct 21513418 AGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATA 21513477 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 ||| || ||||| ||| | || |||| | ||||||||| | || ||||| |||| Sbjct 21513478 CAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGT 21513537 Query 19622 TGGTAGACAGTGGGAACT 19639 ||| | |||||||||| Sbjct 21513538 GGGTCGTGAGTGGGAACT 21513555 >seq376 Length=2445099 Score = 91.5 bits (100), Expect = 4e-14 Identities = 130/190 (68%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1076006 TTTTGTAACTGGATAACYAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1076065 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | | ||| || ||||| | || || || || ||||| Sbjct 1076066 ATGATCCCTACTTTATTGACCKCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 1076125 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 |||||||| ||||| || | ||| || ||||| || || ||| | || |||| |||| Sbjct 1076126 YYGGTAGATATTGATGGTATTCRTGAACCTGTTTCTGGATCTTTACTTTATGGAARCAAT 1076185 Query 19470 ATTATTTCTG 19479 | || || Sbjct 1076186 AWYRTTWYTG 1076195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144439454229756