Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1241 147 4e-30 seq13 140 5e-28 >seq1241 Length=4265459 Score = 147 bits (162), Expect = 4e-30 Identities = 246/356 (69%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | ||||||| | | | | ||||| | ||||| Sbjct 4250729 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTCTGTATTTATTA 4250670 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || |||||||| | ||||| || || || |||||||| || |||| | Sbjct 4250669 TTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 4250610 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | || | ||||| | ||| || || | | |||| || |||| |||| || || | Sbjct 4250609 CTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAG 4250550 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| || ||||| |||||||| | || ||||||| ||| | |||||||||| Sbjct 4250549 GTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTG 4250490 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| || | | | | |||||| | | || | | ||| |||| | Sbjct 4250489 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTG 4250430 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCA 211965 ||||||||||| | ||| | ||||| || |||||||| |||||| |||||| Sbjct 4250429 AGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCA 4250374 >seq13 Length=34719086 Score = 140 bits (154), Expect = 5e-28 Identities = 244/358 (68%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | ||||||| | | | | ||||| | ||||| Sbjct 21513246 TTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACTTCTGTATTTATTA 21513305 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| | |||||||| | ||||| || || || |||||||| || |||| | Sbjct 21513306 TTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 21513365 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | || | ||||| | ||| || || | | |||| || |||| |||| || || | Sbjct 21513366 CTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTGCAGCTATAG 21513425 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| || ||||| |||||||| | || ||||||| ||| | |||||||||| Sbjct 21513426 GTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTTATACAATGGTG 21513485 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| || | | | | |||||| | | || | | ||| |||| | Sbjct 21513486 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACGTGGGTCGTG 21513545 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGC 211967 ||||||||||| | | | ||||| || |||||||| |||||| |||||| | Sbjct 21513546 AGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGCATATTCARC 21513603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807542571855560