Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq672 190 2e-43 seq9 176 5e-39 seq1241 141 1e-28 seq13 138 1e-27 seq629 95.1 1e-14 seq11 95.1 1e-14 seq8 95.1 1e-14 >seq672 Length=1945142 Score = 190 bits (210), Expect = 2e-43 Identities = 376/560 (67%), Gaps = 15/560 (3%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| || | || ||||| || | || |||||| | Sbjct 1649958 TTTGATATTATGGATGACTGGTTACGAAGGAACCGCTTCGTTTTTGTAGGTTGGTCTAGC 1649899 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 | ||||| || |||||||| || | || | || |||||||| |||| | || Sbjct 1649898 CAATTACTCTTTCCTTGTGCCTATTTYGCTTTAGGGGGTTGGTT----GGAATTTAATT- 1649844 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 ||||| || ||| | | ||| || ||| | || || ||||| ||| Sbjct 1649843 ---------TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTTTAACTTCTTA 1649793 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 | || ||||| || || || | | || | | | || | ||||| |||||||| Sbjct 1649792 AGTGATGCAGTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGT 1649733 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 ||||| |||||||||||| || || |||| ||||||||| | |||| || ||||| Sbjct 1649732 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTT 1649673 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 ||| ||||||| | || ||||| |||||||| ||| | | || |||||| |||| || Sbjct 1649672 GCACTACATGGCGCTTTCGGACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGA 1649614 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | | |||| || ||| | |||||||| | ||||| || || Sbjct 1649613 TCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTTTGTT 1649554 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || ||||| |||| ||||||||| | |||||||||| |||||| |||||| Sbjct 1649553 TCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCACCTAGTTTTGGT 1649494 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || ||||| || ||| | | || | || | ||||| || || ||| || || || Sbjct 1649493 GTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAAC 1649434 Query 172335 CCATTTCATATGATGGGTGT 172354 ||||||||||||||||| || Sbjct 1649433 CCATTTCATATGATGGGAGT 1649414 >seq9 Length=33717675 Score = 176 bits (194), Expect = 5e-39 Identities = 301/435 (69%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 171924 TGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCA 171983 ||||| || ||| | | ||| || ||| | || || | ||||| |||| || ||| Sbjct 26714189 TGGTATACCCATAGATTAGCAAGTTCCTATTTGGAAGGCTCTAACTTCTTAAGTGATGCA 26714248 Query 171984 GTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCA 172043 || || || || | | || | | | || | ||||| |||||||| ||||| ||| Sbjct 26714249 GTTTCCACTCCGGCTAATAGTTTAGCGCACTTCTTGTTGTTACTATGGGGTCCTGAAGCA 26714308 Query 172044 CAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACAT 172103 ||||||||| || || |||| ||||||||| | |||| || ||||| ||| ||||| Sbjct 26714309 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTATAGACTTTTGTTGCACTACAT 26714368 Query 172104 GGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGG 172163 || | || | ||| |||||||| ||| | | || |||||| |||| || ||||| Sbjct 26714369 GGCGCTTTCGAACTAATAGGTTT-ATGTTACGTCAATTTGAGCTTGCTCGATCTGTTGAA 26714427 Query 172164 ATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTT 172223 | | |||| || ||| | |||||||| | ||||| || || | ||| | Sbjct 26714428 TTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTGCTGTTTT-----GTTTCTGT 26714482 Query 172224 ----CTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGC 172279 ||||| ||||| ||||||||| |||||||||||| |||||| |||||||| || Sbjct 26714483 ATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAGC 26714542 Query 172280 AGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATT 172339 ||| || ||| | | || | || | ||||| || || ||| || || || ||||| Sbjct 26714543 AGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATTGGACACTAAACCCATT 26714602 Query 172340 TCATATGATGGGTGT 172354 |||||||||||| || Sbjct 26714603 TCATATGATGGGAGT 26714617 >seq1241 Length=4265459 Score = 141 bits (156), Expect = 1e-28 Identities = 257/376 (68%), Gaps = 0/376 (0%) Strand=Plus/Minus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 || ||| |||| | ||| |||| ||||||||||| || ||||||| | | | || Sbjct 4250749 CATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGAC 4250690 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 || || || || ||| | || ||||| ||||| |||||| | ||||| || || || Sbjct 4250689 CGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTAT 4250630 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 | ||||| ||| | || ||||| | ||||| | ||| || || | | |||| | | Sbjct 4250629 TCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTAT 4250570 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 ||| |||| || ||||| || ||||| || || || |||||||| | || | || Sbjct 4250569 TCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGA 4250510 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 170985 || ||||| ||||| || |||||||| || || || || | |||||| | |||| | Sbjct 4250509 TGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 4250450 Query 170986 CTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGAT 171045 || |||| ||||| | |||||||||| | | || || || | |||||||| Sbjct 4250449 AGCTTGCTACGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGAT 4250390 Query 171046 ATGTGTAGCATACTCA 171061 ||| ||||| ||| Sbjct 4250389 TGTTGTTGCATATTCA 4250374 >seq13 Length=34719086 Score = 138 bits (152), Expect = 1e-27 Identities = 228/330 (69%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 170745 || ||| |||| | ||| |||| ||||||||||| || ||||||| | | | || Sbjct 21513226 CATTGAAAATCATCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGAC 21513285 Query 170746 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 170805 || || || || ||| | || ||||| |||| |||||| | ||||| || || || Sbjct 21513286 CGCAACTTCTGTATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTAT 21513345 Query 170806 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 170865 | ||||| ||| | || ||||| | ||||| | ||| || || | | |||| | | Sbjct 21513346 TCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTAT 21513405 Query 170866 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 170925 ||| |||| || ||||| || ||||| || || || |||||||| | || | || Sbjct 21513406 TCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGA 21513465 Query 170926 CGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 170985 || ||||| ||||| || |||||||| || || || || | |||||| | |||| | Sbjct 21513466 TGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 21513525 Query 170986 CTCTGCCTACATGGGTAGACAGTGGGAACT 171015 || |||| ||||| | |||||||||| Sbjct 21513526 AGCTTGCTACGTGGGTCGTGAGTGGGAACT 21513555 >seq629 Length=2291386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 171317 AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGA 171376 || ||||| || | || || ||||| |||||||| || || || || || |||||||| Sbjct 2030033 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 2029974 Query 171377 TACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTC 171436 || || || |||| |||||||| ||||| || |||||||||| ||| ||||||||| Sbjct 2029973 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 2029914 Query 171437 TT 171438 || Sbjct 2029913 TT 2029912 >seq11 Length=35299535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 204/303 (67%), Gaps = 4/303 (1%) Strand=Plus/Minus Query 172532 GTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTT 172591 ||| || || ||||| | || |||| || ||| | ||||| ||||||||||| || Sbjct 68910 GTCCCACATCTTTGGGGTTGCTGTTTCCAATAAACATTGGTTACATTTCCTTATGTTATT 68851 Query 172592 CGTACCTGTCATGGGTATGTGGACA--TCATCTATAGGTATCGTAGGTCTTGCACTTAAC 172649 |||| || | ||| | |||| | ||| | ||| || ||||| || | ||| Sbjct 68850 TGTACTAGTAACCGGTTTATGGATGAGTGCTCTTGAAGTA--GTGGGTCTGGCCTTGAAC 68793 Query 172650 CTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAA 172709 || | | || || ||||| ||||| | || | || |||||| || || ||||| Sbjct 68792 CTACGTGTCTATGATTTTGTTTCTCAGAAAATCCATGTAGTAGAAGATCCTGAATTTGAG 68733 Query 172710 ACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTC 172769 || ||||| || || || ||||| | ||||||||||| || |||||| || Sbjct 68732 ACTTTCTAAACCAACAATATTCTCTTAAATGAAGGTATACATGCTTGGATGGTGGCTCAA 68673 Query 172770 GATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTA 172829 ||||| || |||| ||| || | ||||| || || || || || || || ||||| || Sbjct 68672 GATCAGCCTTATGAAAACCTTATATTCCCTGAGGAGGTTTTACCCCGTGGAAACGCTCTT 68613 Query 172830 TAA 172832 ||| Sbjct 68612 TAA 68610 >seq8 Length=29603939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171317 AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGA 171376 || ||||| || | || || ||||| |||||||| || || || || || |||||||| Sbjct 4091918 AATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTACAATATCGTAGCGGCTCATGGT 4091977 Query 171377 TACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTC 171436 || || || |||| |||||||| ||||| || |||||||||| ||| ||||||||| Sbjct 4091978 TATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAACAACTCTCATTCTTTACACTTC 4092037 Query 171437 TT 171438 || Sbjct 4092038 TT 4092039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570259882421640