Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq486 93.3 1e-13 seq8 91.5 4e-13 >seq486 Length=229640 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA-ATTGTGCTCTTATTTCC 363681 |||| || ||| ||| || || || | ||| || ||||| | | |||||| |||| | Sbjct 170379 TGAAAGATGATAGCATTGAAGGCATTTATGATAC-CTTAAAAGAATGTGCTGTTATCAGC 170437 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 || || || ||||||||||| || ||||||| |||| | ||||| |||||| || Sbjct 170438 AAATCAGCTGGAGGAATTGGTGTCTCTGTCCACAACATTCGGGCCACAG-GCAGTTATAT 170496 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| ||| ||||| | ||||| ||| | || || || | |||| Sbjct 170497 TCGTGGAACAAATGGAACCTCCAATGGCATTGTTCCAATGTTGCGAGTTTTCAATGATAC 170556 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || || ||||| ||||| ||||| Sbjct 170557 TGCTCGTTATGTTGATCAAGGAGGAGGCAAGCGGAAAGG 170595 >seq8 Length=29603939 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | |||| | | ||||| |||||||||||||| |||||||| | Sbjct 2405228 CAGTTCTATGTAGCCAACGGAGAGTTATCATGTCAAATGTATCAGCGTTCTGCTGACCTC 2405287 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || ||||||||||| ||||| |||||| || || || || || ||| | || |||||| Sbjct 2405288 GGCCTTGGTGTTCCATTTAACATTGCATCATATGCTCTTCTGACATGCATGATTGCTCAT 2405347 Query 111822 TTT 111824 || Sbjct 2405348 GTT 2405350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303332709278282