Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 seq111 95.1 1e-14 seq790 89.7 4e-13 seq13 89.7 4e-13 seq12 86.0 5e-12 seq5 86.0 5e-12 seq4 86.0 5e-12 seq350 84.2 2e-11 >seq10 Length=33391235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || ||||||||||| ||||| |||||||||||| |||||| | || |||||| | ||| Sbjct 21109213 GATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 21109272 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | ||||||||||| ||||| || || ||| |||| | || || Sbjct 21109273 GATGGCCGAACTCTTGCGGATTATAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 21109332 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||| ||||| ||||| || Sbjct 21109333 AGGCTGAGGGGAGGAACTATGAT 21109355 >seq111 Length=1131199 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || | || ||| | ||||||||| | | Sbjct 724009 ATGCAGATCTTTGTGAAAACCCTAACSGGGAAGACCATCACCTTGGAAGTCGAGAGCTCC 723950 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || ||||| || || || ||||| ||||||||||| Sbjct 723949 GATACCATCGACAACGTTAAGGCTAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAG 723890 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| || || || | | | | | || |||||||||| Sbjct 723889 CAGCGTCTCATATTCGCCGGAAAGCAGCTTGAGGACGGCCGGACCCTCGCCGATTATAAC 723830 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || | ||| | ||| Sbjct 723829 ATCCAGAAGGAATCGACCCTCCATCTGGTG 723800 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||| ||| ||||||||||| | Sbjct 723781 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATCACCCTCGAAGTCGAGAGTTCC 723722 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| || || || || || || || || || Sbjct 723721 GACACGATCGATAATGTTAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCTGACCAG 723662 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || |||||||||| | || || | | | | | | ||| |||||| Sbjct 723661 CAGAGACTTATCTTCGCCGGCAAGCAATTGGAGGACGGCCGCACCCTAGCCGACTATAAC 723602 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || | || || || | ||||||||||||| Sbjct 723601 ATCCAGAAGGAGTCGACTCTCCACTTGGTTCTCCGATTGAGAGGAGG 723555 >seq790 Length=2681026 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| | || |||||| || | Sbjct 2379949 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTAGAGGTCGAGTCCTCC 2380008 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 2380009 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCGCCGGACCAG 2380068 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | || ||| || ||| Sbjct 2380069 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 2380128 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 2380129 ATCCAGAAGGAGTCCAC 2380145 >seq13 Length=34719086 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| | || |||||| || | Sbjct 6267837 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTAGAGGTCGAGTCCTCC 6267896 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 6267897 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 6267956 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | ||| | || ||| || ||| Sbjct 6267957 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAAC 6268016 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 6268017 ATCCAGAAGGAGTCCAC 6268033 >seq12 Length=31678690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| |||||||||||| |||||| | ||| |||||| | ||| Sbjct 4925883 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 4925824 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | ||||||||||| || || || || || |||| | || || Sbjct 4925823 GATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTKGTCTTG 4925764 Query 24204 AGATTGAGAGGAGGA 24218 || ||||||||||| Sbjct 4925763 AGGCTGAGAGGAGGA 4925749 >seq5 Length=31606955 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || ||||| | || ||| | || || ||| | Sbjct 1683744 ATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAGTCTTCT 1683803 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 1683804 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 1683863 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| |||||||| | | ||| | || || || ||| Sbjct 1683864 CAGCGTCTTATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCGCAGACTACAAC 1683923 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || | || || ||| Sbjct 1683924 ATCCAAAAGGAGTCAACCCTCCACTTGGTG 1683953 >seq4 Length=23020739 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/197 (68%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| | ||||||||| | | Sbjct 9340316 ATGCAGATCTTYGTGAAAACCCTAACSGGGAAKACCATCACCYTGGAAGTCGAGAGCTCC 9340375 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || || ||||| || || || ||||| ||||||||||| Sbjct 9340376 GATACCATCGACAACGTTAAGGCTAAGATCCAAGATAAGGAGGGCATCCCTCCCGATCAG 9340435 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| | || || | | | | || ||||| ||| Sbjct 9340436 CAGCGTCTCATMTTCGCCGGAAAGCAGYTYGARGACGGCCGGACYCTCGCMGATTAYAAC 9340495 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 9340496 ATCCARAAGGAATCGAC 9340512 >seq350 Length=1502417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| |||||||||||| |||||| | ||| || ||| | ||| Sbjct 383404 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAACAATTGGAA 383345 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | ||||||||||| || || || || || |||| | || || Sbjct 383344 GATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTGGTTTTG 383285 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||||||||| ||||| || Sbjct 383284 AGGCTGAGAGGAGGAACTATGAT 383262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429929444953905