Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-15 seq350 93.3 4e-14 seq317 93.3 4e-14 seq111 89.7 4e-13 seq12 86.0 5e-12 seq104 82.4 6e-11 >seq10 Length=33391235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| |||| |||||| || ||| | |||| ||| || || ||||| ||| Sbjct 21109213 GATAAAGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCTGGTAAGCAATTGGAA 21109272 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| | || ||||||||||| ||||| ||||| || | || |||| ||| Sbjct 21109273 GATGGCCGAACTCTTGCGGATTATAACATCCAAAAGGAGTCAACACTTCACCTGGTTTTG 21109332 Query 115499 AGATTGCGAGGAGGAA 115514 || || | ||||||| Sbjct 21109333 AGGCTGAGGGGAGGAA 21109348 >seq350 Length=1502417 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| |||||| || ||| | |||| ||| || |||||||| ||| Sbjct 383404 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAACAATTGGAA 383345 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||||||||| || || ||||| || | || |||| ||| Sbjct 383344 GATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTGGTTTTG 383285 Query 115499 AGATTGCGAGGAGGAA 115514 || || ||||||||| Sbjct 383284 AGGCTGAGAGGAGGAA 383269 >seq317 Length=1923123 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || |||||||| || || || || || ||||| | ||| |||| | Sbjct 1311080 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAKACGATTACTCTGGAAGTGGAGAGCTCG 1311021 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || || ||||| || || | ||| || || Sbjct 1311020 GACACTATTG-ACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCA 1310962 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || || || || |||| | |||| | ||||||||||| Sbjct 1310961 GCAGAGGCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACCCTAGCCGATTATAA 1310902 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || ||||| ||| | || |||| || ||||| ||||||| Sbjct 1310901 TATTCAGAAGGAGTCGACTCTCCACTTGGTTCTGCGATTGAGAGGAGG 1310854 >seq111 Length=1131199 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGA-AACG-GAGTCCA 115343 ||||||||||| || || || || || || || || |||||| | || || |||| | Sbjct 723325 ATGCAAATTTTCGTGAAGACCCTAACAGGGAAGACAATTACCCTGGAGGTCGAGAGTTC- 723267 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| || | | || || || ||| ||||||| || || || || | || ||| Sbjct 723266 -CGATAC-GATTGAYAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGAT 723209 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||| | || | ||| || || ||||| ||||||| || || |||| ||||| Sbjct 723208 CAGCAGAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTAC 723149 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| ||||| ||| | ||| |||| | ||||| | || || Sbjct 723148 AACATCCAAAAGGAGTCAACTTTGCATTTGGTCCTTCGATTGAGGGGTGG 723099 >seq12 Length=31678690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| |||||| || ||| | |||| ||| || || ||||| ||| Sbjct 4925883 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 4925824 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||||||||| || || ||||| || | || | || ||| Sbjct 4925823 GATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTKGTCTTG 4925764 Query 115499 AGATTGCGAGGAGGAA 115514 || || ||||||||| Sbjct 4925763 AGGCTGAGAGGAGGAA 4925748 >seq104 Length=1555027 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||| | || || || || || ||||| | ||| |||| | Sbjct 784460 ATGCAGATCTTCGTYAAACC-CTAACCGGGAAGACGATTACTCTGGAAGTGGAGAGCTCG 784402 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || || ||||| || || | ||| || || Sbjct 784401 GACACTATTG-ACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCGGACCA 784343 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || || || || |||| | |||| | ||||||||||| Sbjct 784342 GCAGAGGCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGCCGAACCCTAGCCGATTATAA 784283 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || ||||| ||| | || |||| || ||||| ||||||| Sbjct 784282 TATTCAGAAGGAGTCGACTCTCCACTTGGTTCTGCGATTGAGAGGAGG 784235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425337514966120