Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1241 129 7e-25 seq855 129 7e-25 seq9 123 3e-23 seq15 122 1e-22 seq486 111 2e-19 >seq1241 Length=4265459 Score = 129 bits (142), Expect = 7e-25 Identities = 257/377 (68%), Gaps = 8/377 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| ||||| |||||||| | |||||||||| || | ||||||||| | Sbjct 519770 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 519829 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || ||||| ||||||| || |||||||||||||||||||| | |||| || || Sbjct 519830 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 519888 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 32828 || |||||||| || || || |||||||| | | || ||| | | | ||| | Sbjct 519889 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 519948 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 519949 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 520005 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || | ||||| || || || | || || | || || || | | || Sbjct 520006 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 520065 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||| || || || ||||| |||||||| || || || ||||||||| | ||| Sbjct 520066 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCC 520125 Query 33009 TCGGTAATCTGTACTTC 33025 |||| | ||| || || Sbjct 520126 TCGGCGACCTGGACCTC 520142 >seq855 Length=4499644 Score = 129 bits (142), Expect = 7e-25 Identities = 257/377 (68%), Gaps = 8/377 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| ||||| |||||||| | |||||||||| || | ||||||||| | Sbjct 753876 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 753935 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || ||||| ||||||| || |||||||||||||||||||| | |||| || || Sbjct 753936 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 753994 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 32828 || |||||||| || || || |||||||| | | || ||| | | | ||| | Sbjct 753995 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGAG 754054 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 754055 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 754111 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || | ||||| || || || | || || | || || || | | || Sbjct 754112 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 754171 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||| || || || ||||| |||||||| || || || ||||||||| | ||| Sbjct 754172 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCC 754231 Query 33009 TCGGTAATCTGTACTTC 33025 |||| | ||| || || Sbjct 754232 TCGGCGACCTGGACCTC 754248 >seq9 Length=33717675 Score = 123 bits (136), Expect = 3e-23 Identities = 256/377 (68%), Gaps = 8/377 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| ||||| |||||||| | |||||||||| || | ||||| || | Sbjct 737463 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGA 737404 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || ||||| ||||||| || |||||||| ||||||||||| | |||||| | ||| Sbjct 737403 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCG-CGCAAAAACTCCCA 737345 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCG 32828 || |||||||| ||||| || |||||||| | | || ||| | | | | | | Sbjct 737344 GAGAAGAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGAG 737285 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| | | ||||| | ||||||||| || || || || || || Sbjct 737284 CCGTC---GATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 737228 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || | ||||| || || || | | ||| || | || || || | | || Sbjct 737227 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAGG 737168 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||| || || || ||||| || || || || || || ||||||||| | ||| Sbjct 737167 CTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAGGCGCGGGCC 737108 Query 33009 TCGGTAATCTGTACTTC 33025 |||| | ||| || || Sbjct 737107 TCGGCGACCTGGACCTC 737091 >seq15 Length=47181002 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | |||| |||||||||||||||||| ||| || Sbjct 34780773 TCCTCCTTGATCAACATAACGGGCCGTATCATTAAAAACTCTCAACATTGGAACAATGCC 34780832 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||||| || ||||| || || ||||| || || ||||||| || ||| || ||| Sbjct 34780833 ATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATGTTATGAACTGA 34780892 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || || ||| | || ||| ||| || |||||||| || Sbjct 34780893 GACACCAATTCCTCCAGCTGACTTGCTGATAACAGCACATTCTTTCAAGGTATCATAAAT 34780952 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||| || || |||||||| ||||| || || || ||||| Sbjct 34780953 GCCTTCAATGCTATCATCTTTCATGCAAACAAGGAAGCAGCT 34780994 >seq486 Length=229640 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 ||| ||| |||||| ||||| | || | ||| || | ||| |||||| ||||||||| Sbjct 170590 CCGCTTGCCTCCTCCTTGATCAACATAACGAGCAGTATCATTGAAAACTCGCAACATTGG 170531 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 || ||| |||||||| || ||||| || || ||||| || || |||| ||||| || Sbjct 170530 AACAATGCCATTGGAGGTTCCATTTGTTCCACGAATATAACTGCCTGTGGCCCGAATGTT 170471 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 | || | ||| ||||| || || ||| ||| | || ||| |||||| || Sbjct 170470 GTGGACAGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACATTCTTTTAAGGT 170411 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 |||||| ||||| || || |||||||| ||| | || || || ||||| Sbjct 170410 ATCATAAATGCCTTCAATGCTATCATCTTTCAAGCAAACAAGGAAGCAGCT 170360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622091579600