Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq699 118 9e-22 seq317 104 2e-17 seq104 100 2e-16 seq350 96.9 3e-15 seq12 93.3 4e-14 seq931 91.5 1e-13 seq111 89.7 4e-13 seq4 89.7 4e-13 seq96 84.2 2e-11 >seq699 Length=1873381 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | ||||| || ||||||| |||| |||||||| || Sbjct 139614 AATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCATC 139673 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| || ||| ||||| ||||||||||| || ||||| Sbjct 139674 CGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATTCCCCCAGACCA 139733 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||| || || | ||||||| || || | | || ||||| Sbjct 139734 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGTACCCTTGCAGACTACAA 139793 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || ||||| Sbjct 139794 CATCCAGAAAGAGTCAACCCTCCACTTGGTGCT 139826 >seq317 Length=1923123 Score = 104 bits (114), Expect = 2e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || || || || | ||||| || ||||||| |||| || ||| Sbjct 1311540 AACCATGCAGATCTTCGTGAAAACCCTSACCGGCAAGACCATCACTCTCGAGGTYGAGAG 1311481 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| ||||| | ||| || ||| ||||| || || ||||| || || Sbjct 1311480 TTCGGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGA 1311421 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | ||||| ||||| || || | || || | || || | | ||||| Sbjct 1311420 CCAGCAGCGGTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTAGCGGATTA 1311361 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || ||||| ||||| ||| | ||||| || | || ||||| Sbjct 1311360 CAATATCCAGAAGGAATCGACGCTCCATCTGGTGCTTCGGTTGAGGGGAGG 1311310 >seq104 Length=1555027 Score = 100 bits (110), Expect = 2e-16 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || | || || | ||||| || ||||||| |||| || ||| Sbjct 784920 AACCATGCAGATCTTCKTGAAAACCCTSACCGGCAAGACCATCACTCTCGAGGTYGAGAG 784861 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| ||||| | ||| || ||| ||||| || || ||||| || || Sbjct 784860 TTCGGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGA 784801 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | ||||| ||||| || || | || || | || || | | ||||| Sbjct 784800 CCAGCAGCGGTTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACCCTAGCGGATTA 784741 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || || ||||| ||||| ||| | ||||| || | || ||||| Sbjct 784740 CAATATCCAGAAGGAATCGACGCTCCATCTGGTGCTTCGGTTGAGGGGAGG 784690 >seq350 Length=1502417 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| || || ||||| |||||| | | ||||||||||| |||||||| ||| Sbjct 383404 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAACAATTGGAA 383345 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| ||| | | ||||| || || || || || || ||||| || | || | Sbjct 383344 GATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTGGTTTTG 383285 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| |||||||||| Sbjct 383284 AGGCTGAGAGGAGGAA 383269 >seq12 Length=31678690 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| || || ||||| |||||| | | ||||||||||| || ||||| ||| Sbjct 4925883 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 4925824 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| ||| | | ||||| || || || || || || ||||| || | || | Sbjct 4925823 GATGGTCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTKGTCTTG 4925764 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| |||||||||| Sbjct 4925763 AGGCTGAGAGGAGGAA 4925748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| |||| || ||| || Sbjct 16199317 ATGCAGATCTTCGTGAAAACCCTAACCGGYAAGACCATCACTCTCGAGGTCGAGARYTCC 16199258 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || ||| ||||| || || || | || || || Sbjct 16199257 GACACGATCGA-TAACGTCAAGGCTAARATCCAGGACAAGGAGGGCATCCYTCCCGATCA 16199199 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||| || ||||| || || | || |||| || || | | ||||||||| Sbjct 16199198 GCAGCGGCTTATCTTYGCCGGAAAGCAGCTCGAGGATGGCCGGACCCTTGCCGATTACAA 16199139 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| || || ||| | || || Sbjct 16199138 TATCCAGAAGGAATCGACTCTCCATCTGGTCCT 16199106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/215 (67%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | || || | || || ||| || Sbjct 16198633 ATGCAGATYTTYGTSAARACMCTRACMGGGAAGACGATMACTYTSGAGGTYGAGAGCTCY 16198574 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | || || || || ||||| ||||||||| Sbjct 16198573 GAYACKATYGA--CAATGTCAARGCYAAGATYCAR-GAYAAGGAGGGGATCCCACCTGAC 16198517 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || || || || ||||| |||| |||| ||| || | | |||||| Sbjct 16198516 CAGCAGAGGTTGATCTTCGCTGGGAAACAGCTAGAGGATGGTCGTACCCTTGCGGATTAC 16198457 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || ||| | || || Sbjct 16198456 AACATTCAGAAAGAGTCTACCCTCCATCTCGTTCT 16198422 >seq931 Length=1020267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/212 (67%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || ||| |||| || | || || || ||| Sbjct 506068 ATGCAAATCTTTGTGAARACCTTGACTGGAAAAACCATYACCCTMGARGTTGAAAGYTCT 506009 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | || || ||| ||||| || || ||||| || ||||| Sbjct 506008 GAYACWATTGATAATGTSAARGCCAARATCCARGACAAGGAGGGCATTCCCCCAGACCAR 505949 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| ||||| || | || || | | || | | ||| ||||| Sbjct 505948 CAAAGGYTGATCTTTGCWGGCAAGCAGCTTGAGGAYGGMMGSACMCTYGCCGACTACAAC 505889 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 505888 ATWCARAAGGAGTCCACYCTSCACYTGGTGCT 505857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/222 (69%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 24994 GAACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 ||||| ||||| || || || || || | || || || ||||||| |||| || || Sbjct 506758 GAACAGATGCAGATCTTYGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAA 506699 Query 25053 TCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 ||||||||||| || |||| |||| || ||| ||||| || || ||||| Sbjct 506698 AGCTCTGACACTATTGATAATGTCA---AAGC-CAAGATCCAAGACAAGGAGGGCATTCC 506643 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 || ||||| || || | || ||||| ||||| || | || |||| ||||| | | Sbjct 506642 CCCAGACCAGCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGC 506583 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || || ||||| || || | ||||| Sbjct 506582 CGACTACAACATACARAAGGAGTCCACCCTCCACCTGGTGCT 506541 >seq111 Length=1131199 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || | || || | || || ||| ||| Sbjct 723553 ATGCAGATTTTTGTCAAAACCCTAACGGGGAAGACAATTACTCTGGAGGTCGAGAGCTCT 723494 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | || ||||| || ||| || || || || ||||| || || || Sbjct 723493 GATACCATCGA-TAACGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCGGATCA 723435 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || ||||| ||||| ||||||| | ||| ||| |||||||| Sbjct 723434 GCAGCGGTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCAGGACTCTGGCGGATTACAA 723375 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || || ||||| Sbjct 723374 TATCCAGAAGGAGTCGACTCTCCACTTGGTGCT 723342 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/213 (68%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | ||||| || ||||||| | ||||| || || Sbjct 723097 ATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACCATCACTCTGGAAGTYGARAGCTCG 723038 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || || ||||| || || || || || || ||||| ||||| || Sbjct 723037 GATACGATYGA-YAACGTGAAGGCSAAGATYCARGAYAAGGAGGGTATTCCYCCTGATCA 722979 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || |||| || || || || ||||| || || | | || ||| |||||||| Sbjct 722978 GCARAGGCTTATCTTYGCTGGSAARCAATTGGAGGACGGCAGGACCYTGGCGGATTACAA 722919 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 722918 CATCCAGAAGGAGTCGACTCTYCAYYTKGTGCT 722886 >seq4 Length=23020739 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || | || || | || || ||| ||| Sbjct 9341456 ATGCARATWTTTGTGAARACMCTRACAGGRAAGACRATYACTCTGGAGGTYGAGAGCTCT 9341515 Query 25059 GACACTATCGAGTCAC-TGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || || |||| || || | ||| ||||| || || || ||||| |||| Sbjct 9341516 GAYACTATTGA-YAACGTGAAAGCTAAGATTCAG-GACAAGGAGGGTATCCCACCGGACC 9341573 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || ||||| || ||||| | || |||| ||| || | | |||||| | Sbjct 9341574 AGCAGAGATTGATCTTTGCTGGGAAACAGCTCGAGGATGGTCGTACCCTTGCCGATTATA 9341633 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 ||||||| ||||| || || || || Sbjct 9341634 ATATTCAGAAAGAGTCTACCCTCCA 9341658 >seq96 Length=1311920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || ||||| || || | ||||| || ||||||| |||| || || Sbjct 515276 AACAGATGCAGATCTTTGTGAAAACCCTAACCGGAAAGACCATCACCCTCGAGGTTGAAA 515335 Query 25054 CGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||||| || || || || |||| || | || ||||| ||||| ||||| | Sbjct 515336 GCTCCGACACCATTGA--CAATGTCAAAGCCAAGATCCAA-GACAAGGAAGGTATTCCCC 515392 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||| || || | || ||||||||||| || | || || | ||||| | | || Sbjct 515393 CAGACCAGCAAAGGCTGATATTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCG 515452 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| || || || || ||||| || || |||| || Sbjct 515453 ACTACAACATCCAGAAGGAGTCCACCCTCCACCTAGTTCT 515492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433321393237565