Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq9 286 4e-72 seq672 253 2e-62 seq1241 147 2e-30 seq13 140 4e-28 seq629 114 1e-20 seq8 114 1e-20 seq1081 111 2e-19 seq5 86.0 7e-12 >seq9 Length=33717675 Score = 286 bits (316), Expect = 4e-72 Identities = 386/536 (72%), Gaps = 2/536 (0%) Strand=Plus/Plus Query 167529 TACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCT 167588 |||| ||||||||||| | || || ||||| | | ||||| || | || | || | Sbjct 26714289 TACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTAT 26714348 Query 167589 GGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTG 167648 | ||||||| || || || || || || | || ||||| |||||| | || ||||||| Sbjct 26714349 AGACTTTTGTTGCACTACATGGCGCTTTCGAACTAATAGG-TTTATGTTACGTCAATTTG 26714407 Query 167649 AGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTG 167708 || | | || || | | | |||| ||||| ||||| || || ||||| |||| Sbjct 26714408 AGCTTGCTCGATCTGTTGAATTGTGACCTTGTAATGCAATTGCATTCTCCGGTCCAATTG 26714467 Query 167709 CTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCAC 167768 |||| ||||| ||||| || || || ||||| | || ||||| |||||||||||||||| Sbjct 26714468 CTGT-TTTGTTTCTGTATTCCTAATTTATCCGTTAGGTCAGTCTAGTTGGTTCTTTGCAC 26714526 Query 167769 CGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACT 167828 | |||||||| ||||| |||||| ||||| | || || | ||||| || ||||| | Sbjct 26714527 CTAGTTTTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATT 26714586 Query 167829 GGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTT 167888 |||| || ||||| || |||||||||||||||| ||| | | |||| ||| ||| | | Sbjct 26714587 GGACACTAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTTTGTTAT 26714646 Query 167889 CTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACA 167948 || || || |||| || || | |||||| | | || ||||||||| ||||| | Sbjct 26714647 GCGCTATTCACGGTGCTATCATAAAAAATACTTTATTTGGAGATGGTGATGGTGCAAATA 26714706 Query 167949 CTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACC 168008 | ||| | || | | ||||| | || ||||||||||| |||||||| |||||| Sbjct 26714707 CATTCCGTGGTTTCAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACC 26714766 Query 168009 GATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTC 168064 || ||||| ||||| ||| | ||||||| |||||| |||||||| || ||| Sbjct 26714767 RCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 26714822 >seq672 Length=1945142 Score = 253 bits (280), Expect = 2e-62 Identities = 376/536 (70%), Gaps = 15/536 (3%) Strand=Plus/Minus Query 167529 TACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCT 167588 |||| ||||||||||| | || || ||||| | | ||||| || | || | || | Sbjct 1649743 TACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCAGTCTAT 1649684 Query 167589 GGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTG 167648 | ||||||| || || || || || || | || ||||| |||||| | || ||||||| Sbjct 1649683 AGACTTTTGTTGCACTACATGGCGCTTTCGGACTAATAGG-TTTATGTTACGTCAATTTG 1649625 Query 167649 AGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTG 167708 || | | || || | | |||| ||||| ||||| || || ||||| |||| Sbjct 1649624 AGCTTGCTCGATCTGTTSAATTGTGACCTTRTAATGCAATTGCATTCTCCGGTCCAATTG 1649565 Query 167709 CTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCAC 167768 |||| ||||| ||||| || || || |||| | || ||||| ||||||||||||||| Sbjct 1649564 CTGTTTTTGTTTCTGTATTCCTAATTTATCYRTTAGGTCAGTCTRGTTGGTTCTTTGCAC 1649505 Query 167769 CGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACT 167828 | |||||||| ||||| |||||| ||||| | || || | ||||| || ||||| | Sbjct 1649504 CTAGTTTTGGTGTAGCAGCTATATTTTGATTCATCCTCTTTTTYCAGGGGTTTCATAATT 1649445 Query 167829 GGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTT 167888 |||| || ||||| || |||||||||||||||| ||| | | |||| ||| || | | Sbjct 1649444 GGACACTAAACCCATTTCATATGATGGGAGTTGTTGGGGTGTTGGGCGCTGCTYTGTTAT 1649385 Query 167889 CTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACA 167948 || || || |||| || || | |||||| | | || |||||| || || Sbjct 1649384 GCGCTATTCACGGTGCTATCATARAAAATACTTTATTTGGAGATGGGGA--AA------- 1649334 Query 167949 CTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACC 168008 ||| ||| | | ||||| | || ||||||||||| |||||||| |||||| Sbjct 1649333 --TTC---CGGTTTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCACTAACC 1649279 Query 168009 GATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTC 168064 || ||||| ||||| ||| | ||||||| |||||| |||||||| || ||| Sbjct 1649278 RCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 1649223 >seq1241 Length=4265459 Score = 147 bits (162), Expect = 2e-30 Identities = 255/366 (70%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 166086 TCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTG 166145 |||||| |||| |||||||| ||||||| | ||| | ||| | ||||| |||| Sbjct 4250737 TCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTG 4250679 Query 166146 T-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCG 166204 | || || | |||||| | || |||||||| | ||||| ||||| || ||||| || | Sbjct 4250678 TATTTATTATTGCTTTCATTGCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 4250619 Query 166205 TAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--CTCCTC 166262 | | || ||| || | ||||| | ||| || || | | |||| || | || || || Sbjct 4250618 TTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTG 4250559 Query 166263 CAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCT 166322 || || || ||| | ||||| || || || |||||||| | || ||||||||||| | Sbjct 4250558 CA--GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTT 4250501 Query 166323 TTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTA 166382 || || |||||||||| |||| | || | |||||| | | || | | ||| Sbjct 4250500 ATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTA 4250441 Query 166383 CATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGC 166442 | |||||||||| |||||| | || || || ||||| || ||||||||| || || Sbjct 4250440 CGTGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATACGCCCTTGGATTGTTGTTGC 4250381 Query 166443 ATACTC 166448 ||| || Sbjct 4250380 ATATTC 4250375 >seq13 Length=34719086 Score = 140 bits (154), Expect = 4e-28 Identities = 252/366 (69%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 166086 TCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTG 166145 |||||| |||| |||||||| ||||||| | ||| | ||| | ||||| |||| Sbjct 21513238 TCTTTACATTGGATGGTTTGGTGTTTTGATGATCCTTACTTTATTGACCGCAACT-TCTG 21513296 Query 166146 T-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCG 166204 | || || | |||||| | | |||||||| | ||||| ||||| || ||||| || | Sbjct 21513297 TATTTATTATTGCTTTCATTRCTGCACCTCCAATAGATATTGATGGTATTCGTGAACCTG 21513356 Query 166205 TAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--CTCCTC 166262 | | || ||| || | ||||| | ||| || || | | |||| || | || || || Sbjct 21513357 TTTCTGGATCTTTACTTTATGGAAGCAATATTATTTTTTGTGCCATTATTCCTACTTCTG 21513416 Query 166263 CAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCT 166322 || || || ||| | ||||| || || || |||||||| | || ||||||||||| | Sbjct 21513417 CA--GCTATAGGTTTGCACTTTTACCCTATATGGGAAGCGACTTCTGTTGATGAATGGTT 21513474 Query 166323 TTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTA 166382 || || |||||||||| |||| | || | |||||| | | || | | ||| Sbjct 21513475 ATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTA 21513534 Query 166383 CATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGC 166442 | |||||||||| |||||| | || || ||||| || ||||||||| || || Sbjct 21513535 CGTGGGTCGTGAGTGGGAACTTAGTTTTYKTCTGGGTATACGCCCTTGGATTGTTGTTGC 21513594 Query 166443 ATACTC 166448 ||| || Sbjct 21513595 ATATTC 21513600 >seq629 Length=2291386 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 166684 ACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTAC 166743 ||||| |||| ||| | | || || ||||||| ||||||||||| ||||| |||||| Sbjct 2030054 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 2029995 Query 166744 AACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAAC 166803 || ||||| || ||||||||||| || || | ||||||||||||| ||| || ||| Sbjct 2029994 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 2029935 Query 166804 AACTCTCGCTCGCTGCACTTCTT 166826 ||||||| || | |||||||| Sbjct 2029934 AACTCTCATTCTTTACACTTCTT 2029912 >seq8 Length=29603939 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 166684 ACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTAC 166743 ||||| |||| ||| | | || || ||||||| ||||||||||| ||||| |||||| Sbjct 4091897 ACCACAGAAAATGAATATGCTAATTACGGTTACAGATTTGGTCAAGAGGAAGAAACCTAC 4091956 Query 166744 AACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAAC 166803 || ||||| || ||||||||||| || || | ||||||||||||| ||| || ||| Sbjct 4091957 AATATCGTAGCGGCTCATGGTTATTTTGGCTGATTGATCTTCCAATATGCTAGTTTGAAC 4092016 Query 166804 AACTCTCGCTCGCTGCACTTCTT 166826 ||||||| || | |||||||| Sbjct 4092017 AACTCTCATTCTTTACACTTCTT 4092039 >seq1081 Length=585217 Score = 111 bits (122), Expect = 2e-19 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 167748 AGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTAT 167807 |||| |||||||||||||| | ||| |||| ||||| |||||| ||||| | || | Sbjct 578919 AGTCTAGTTGGTTCTTTGCGCTCAATTTTCGTGTGGCAGCTATATTTTGATTCATCCTCT 578860 Query 167808 TCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTA 167867 | | ||||| || ||||| || || | ||| || ||||||||| |||||| ||| Sbjct 578859 TTTTCCAGGGGTTTCATAATTGAACATTGAACTYATTTCATATGATGAGAGTTGTTGGAG 578800 Query 167868 TCCTAGGCGGTGCATTGCTTTCTGCA--ATCCATGGTGTTACAGTAGAGAATACTCTGTA 167925 | | ||| ||| | || |||| || ||||||||||| ||||| ||||| | | Sbjct 578799 TGTTGGGCACTGCTCTR--TTATGCACTATTCATGGTGTTACTGTAGAAGATACTTTATT 578742 Query 167926 TGAAGATGGTGA 167937 |||||||||||| Sbjct 578741 TGAAGATGGTGA 578730 >seq5 Length=31606955 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/180 (71%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 167881 ATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCA 167940 || ||||| | | || ||||||| ||| ||||| |||||| | | |||||||||||| Sbjct 10237640 ATGGCTTTGTTCTATTCATGGTGCTACCGTAGA-AATACTTTATTTGAAGATGGTGATGG 10237698 Query 167941 AGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCAC 168000 ||||| || ||| || ||| | | ||||| | || |||||||||| ||| Sbjct 10237699 TGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT------TCAA 10237752 Query 168001 TGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCA 168060 || | |||| || | ||| ||||| | ||| ||||||| ||||| |||||||| || Sbjct 10237753 TGGTCACCG-TTTTSGTCCCAAATCTATGGGGTTGCTTTTTCCAATAGACGTTGGTTACA 10237811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567223129909600