Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9 143 3e-29 seq1241 127 2e-24 seq855 127 2e-24 seq2 95.1 1e-14 seq12 91.5 2e-13 seq304 89.7 6e-13 seq15 89.7 6e-13 seq8 89.7 6e-13 seq1167 87.8 2e-12 seq14 87.8 2e-12 seq1 87.8 2e-12 seq7 82.4 9e-11 >seq9 Length=33717675 Score = 143 bits (158), Expect = 3e-29 Identities = 388/591 (66%), Gaps = 7/591 (1%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| || ||||| |||||| || || || ||||||||||| |||| ||| || Sbjct 737465 GTACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGA 737406 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || | || || | | || || || || ||||||||||| | |||||| || Sbjct 737405 GAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTTAGCCAAAATATCGCGCAAAAACTCCC 737346 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 ||| || || || ||||||||| ||||| ||||| || || || || ||| | || Sbjct 737345 AGAGAAGAAAATCCCTTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGA 737286 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | ||||||| | | ||||| | ||| || ||| | || || | || || Sbjct 737285 ---GCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTC 737229 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| |||| || ||| | |||||| ||||| ||||| || |||| | || Sbjct 737228 GATCGCGTGGAAGAGGCGGTGCTTCTCGTCAGAATCCTTGATGTACGTCTCGAGAAGGAG 737169 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 ||||| || || |||| ||||| ||||| || ||||| |||||||| | || Sbjct 737168 GCTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAACCCGTAGAAGGCGCGGGC 737109 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 || | || ||| || || | || || | ||||||| || ||| || ||||| Sbjct 737108 CTCGGCGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCCAGGACAATTCCATC 737049 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC--TTTAAGC 93559 ||| || || || || || | || ||| | || || |||| | || | ||| Sbjct 737048 GGAAGCGGCGAAGAAGGCGAGGATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGAGC 736989 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 | ||||| | | | || | |||| ||||| || ||| | ||||| || || ||| Sbjct 736988 T--TCCCAGTGGCGGACGTCCTGGCAAAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCT 736931 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || || || |||||||| ||||| || || | || || || || || ||| Sbjct 736930 TCCGCCTTCTTGTACATTTCCCAGATTTCAGGGTACTGGATCGGGAACATG 736880 >seq1241 Length=4265459 Score = 127 bits (140), Expect = 2e-24 Identities = 386/591 (65%), Gaps = 9/591 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| || ||||| |||||| || || || |||||||| || |||| || ||| Sbjct 519768 GTACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGA 519827 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| || | || || | | || || || || ||||||||||| | ||| ||||| | Sbjct 519828 GAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCC 519886 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || |||||| ||||| ||||| || || || || ||| ||| Sbjct 519887 CCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGG 519946 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | ||||||| | | ||||| | ||| || ||| | || || | || | Sbjct 519947 A---GCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGT 520003 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 |||| |||| || ||| | |||||| || || ||||| || |||| | | Sbjct 520004 CGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGA 520063 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | ||||| || || |||| ||||| || || || ||||| |||||||| | | Sbjct 520064 GGCTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGG 520123 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| || || | ||| ||| | ||||||| ||| ||| || || | Sbjct 520124 CCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGT 520183 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 |||| || || || || || | || ||| | || || |||| | || || Sbjct 520184 CGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGG 520243 Query 93561 TATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 ||||| | ||||| || | | || ||||| || ||| | ||||| || || || Sbjct 520244 CCTCCCAGTGGCGGAT--GTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGC 520301 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || || || |||||||| ||||| || || | || || || ||||| || Sbjct 520302 CTCGGCCTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACAT 520352 >seq855 Length=4499644 Score = 127 bits (140), Expect = 2e-24 Identities = 386/591 (65%), Gaps = 9/591 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| || ||||| |||||| || || || |||||||| || |||| || ||| Sbjct 753874 GTACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGA 753933 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| || | || || | | || || || || ||||||||||| | ||| ||||| | Sbjct 753934 GAAAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCC 753992 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || |||||| ||||| ||||| || || || || ||| ||| Sbjct 753993 CCGAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGG 754052 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | ||||||| | | ||||| | ||| || ||| | || || | || | Sbjct 754053 A---GCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGT 754109 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 |||| |||| || ||| | |||||| || || ||||| || |||| | | Sbjct 754110 CGATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGA 754169 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | ||||| || || |||| ||||| || || || ||||| |||||||| | | Sbjct 754170 GGCTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGG 754229 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | || ||| || || | ||| ||| | ||||||| ||| ||| || || | Sbjct 754230 CCTCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGT 754289 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCT 93560 |||| || || || || || | || ||| | || || |||| | || || Sbjct 754290 CGGAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGG 754349 Query 93561 TATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 ||||| | ||||| || | | || ||||| || ||| | ||||| || || || Sbjct 754350 CCTCCCAGTGGCGGAT--GTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGC 754407 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 || || || |||||||| ||||| || || | || || || ||||| || Sbjct 754408 CTCGGCCTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACAT 754458 >seq2 Length=36374806 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/101 (82%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 30106642 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 30106701 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAAT 126362 ||||||||| || ||||| ||||| | ||| | ||||||| Sbjct 30106702 CGTGGGTTCAAATCCCACTTCTGAC-ATTTACTTTTGGAAT 30106741 >seq12 Length=31678690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/102 (81%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2718398 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2718455 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| ||||| |||||| |||||||| Sbjct 2718456 TTCAAATCCCACAGCTGTCAAAT--TTATTG--TTTTTTGTT 2718493 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||| ||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 14506684 GTCAGGATGGCCGAATGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 14506743 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 14506744 TGGGTTCAAATCCCACTTCTGACA 14506767 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/90 (81%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 21055028 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 21054971 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| |||||| || Sbjct 21054970 GCGTGGGTTCAAATCCCACTTCTGACAGAT 21054941 >seq304 Length=1809640 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/102 (81%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 850084 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 850027 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| |||| |||||| | |||||||| Sbjct 850026 TTCAAATCCCACAGCTGTCAAA--ATTATT-GTTTTTTTGTT 849988 >seq15 Length=47181002 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | | || | || Sbjct 39458974 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTTTAACGAGGGC 39458915 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||| || ||||| ||||||||| Sbjct 39458914 GTGGGTTCAAATCCCACTTCTGACAAAT 39458887 >seq8 Length=29603939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 7713482 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 7713541 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 7713542 CGTGGGTTCAAATCCCACTTCTGACA 7713567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 6/90 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 885479 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 885422 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||| || ||||| ||||||||| Sbjct 885421 GCGTGGGTTCAAATCCCACTTCTGACAAAT 885392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 25303596 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 25303655 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 25303656 GTGGGTTCAAATCCCACTTCTGACA 25303680 >seq1167 Length=79491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/100 (81%), Gaps = 6/100 (6%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 75676 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 75619 Query 126328 TTCGAACCCCACACCTGACAAA-TTATTATTGGAATTTTT 126366 ||| || |||||| ||| |||| |||| ||| |||||| Sbjct 75618 TTCAAATCCCACAGCTGTCAAATTTATCATT---ATTTTT 75582 >seq14 Length=29158859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/100 (81%), Gaps = 6/100 (6%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2776781 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2776838 Query 126328 TTCGAACCCCACACCTGACAAA-TTATTATTGGAATTTTT 126366 ||| || |||||| ||| |||| |||| ||| |||||| Sbjct 2776839 TTCAAATCCCACAGCTGTCAAATTTATCATT---ATTTTT 2776875 >seq1 Length=29289779 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 26406410 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 26406351 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 26406350 GTGGGTTCAAATCCCACTTCTGACA 26406326 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 26996282 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 26996223 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 26996222 TGGGTTCAAATCCCACTTCTGACA 26996199 >seq7 Length=26383534 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 25356503 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 25356560 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 25356561 TTCAAATCCCACAGCTGTCAAA 25356582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556852092089240