Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 131 3e-25 seq176 127 4e-24 seq2 123 5e-23 seq815 91.5 3e-13 seq15 91.5 3e-13 seq12 91.5 3e-13 seq9 89.7 1e-12 seq1231 87.8 4e-12 seq1159 87.8 4e-12 seq932 87.8 4e-12 seq17 87.8 4e-12 seq13 87.8 4e-12 seq10 87.8 4e-12 seq4 87.8 4e-12 seq3 87.8 4e-12 seq411 86.0 1e-11 seq855 84.2 4e-11 >seq7 Length=26383534 Score = 131 bits (144), Expect = 3e-25 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 |||||||| |||| |||||| | |||||| || | ||||| |||||| | | Sbjct 1246898 TCTATTCCGTCAATGGTAGATGGCTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCT 1246839 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||||| | || | ||| || || || ||||||||||||||||| || || Sbjct 1246838 TTTAAGAGGAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAG 1246779 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCT-GCAGGGTGCCATTGTAGGCATGGCACA 218747 ||||| |||||| || |||||||||||||| ||| | | | ||| | || |||||||| Sbjct 1246778 CATTCTGCCTACCACCATGGTGAGCAGAGTCTTGCAAG-TACTATTATTGGGATGGCACA 1246720 Query 218748 GGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 ||| | |||||| || || || || || | || | || || ||||| |||||| | || Sbjct 1246719 GGATTTTGTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCG 1246660 Query 218808 T 218808 | Sbjct 1246659 T 1246659 >seq176 Length=2116299 Score = 127 bits (140), Expect = 4e-24 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 |||||||| |||| ||||| | |||||| || | ||||| |||||| | | Sbjct 1040824 TCTATTCCGTCAATGGTAGATGGYTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCT 1040883 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||||| | || | ||| || || || ||||||||||||||||| || || Sbjct 1040884 TTTAAGAGGAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTATGTGTCTGAG 1040943 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTC-TGCAGGGTGCCATTGTAGGCATGGCACA 218747 ||||| |||||| || ||||||||||||| |||| || | ||| | || |||||||| Sbjct 1040944 CATTCTGCCTACCACCATGGTGAGCAGAGTCTTGCA-AGTACTATTATTGGGATGGCACA 1041002 Query 218748 GGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 ||| | |||||| || || || || || | || | || || ||||| |||||| | || Sbjct 1041003 GGATTTTGTGGGGAGCAATAATATCAATCTTCTTCAACCAAATGGTCAATTTGGTACCCG 1041062 Query 218808 T 218808 | Sbjct 1041063 T 1041063 >seq2 Length=36374806 Score = 123 bits (136), Expect = 5e-23 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 |||||||| |||| |||||| | |||||| || | ||||| |||||| | | Sbjct 35141786 TCTATTCCGTCAATGGTTGATGGCTTGAAGCCAGGTCAAAGGAAGATTCTCTTTAGCTCC 35141727 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||||| | || | ||| || || || |||||||||||||| || || || Sbjct 35141726 TTTAAGAGGAACTTTGTCAAGGAAGCAAAAGTTGCCCAGTTTTCTGGTTAYGTGTCTGAG 35141667 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCT-GCAGGGTGCCATTGTAGGCATGGCACA 218747 ||||| |||||| || |||||||||||||| ||| | | | || | || |||||||| Sbjct 35141666 CATTCTGCCTACCACCATGGTGAGCAGAGTCTTGCAAG-TACTATCATTGGGATGGCACA 35141608 Query 218748 GGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 ||| | |||||| || || || || || | || | || || ||||| |||||| | || Sbjct 35141607 GGATTTTGTGGGGAGCAATAATATCAATCTTCTTCAACCGAATGGTCAATTTGGTACCCG 35141548 Query 218808 T 218808 | Sbjct 35141547 T 35141547 >seq815 Length=1144397 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 167049 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 167108 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 167109 AGCCCCAC 167116 >seq15 Length=47181002 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 25006316 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 25006375 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 25006376 AGCCCCAC 25006383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 37002585 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 37002526 Query 142564 CCCAC 142568 ||||| Sbjct 37002525 CCCAC 37002521 >seq12 Length=31678690 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 24731318 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 24731377 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 24731378 AGCCCCAC 24731385 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 18720533 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18720592 Query 142564 CCCAC 142568 ||||| Sbjct 18720593 CCCAC 18720597 >seq9 Length=33717675 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 420830 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 420771 Query 142562 GCCCCAC 142568 ||||||| Sbjct 420770 GCCCCAC 420764 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 421601 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 421542 Query 142563 CCCCAC 142568 |||||| Sbjct 421541 CCCCAC 421536 >seq1231 Length=480911 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 49956 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 49897 Query 142563 CCCCAC 142568 |||||| Sbjct 49896 CCCCAC 49891 >seq1159 Length=195385 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 706 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 765 Query 142563 CCCCAC 142568 |||||| Sbjct 766 CCCCAC 771 >seq932 Length=2264437 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 297446 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 297387 Query 142563 CCCCAC 142568 |||||| Sbjct 297386 CCCCAC 297381 >seq17 Length=24923725 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14149333 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14149274 Query 142563 CCCCAC 142568 |||||| Sbjct 14149273 CCCCAC 14149268 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 283934 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 283993 Query 142564 CCCAC 142568 ||||| Sbjct 283994 CCCAC 283998 >seq13 Length=34719086 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 979087 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 979146 Query 142563 CCCCAC 142568 |||||| Sbjct 979147 CCCCAC 979152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 9626942 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9627001 Query 142563 CCCCAC 142568 |||||| Sbjct 9627002 CCCCAC 9627007 >seq10 Length=33391235 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1405469 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1405410 Query 142563 CCCCAC 142568 |||||| Sbjct 1405409 CCCCAC 1405404 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17911104 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17911163 Query 142563 CCCCAC 142568 |||||| Sbjct 17911164 CCCCAC 17911169 >seq4 Length=23020739 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 7382595 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7382654 Query 142563 CCCCAC 142568 |||||| Sbjct 7382655 CCCCAC 7382660 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5132366 AGCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5132425 Query 142563 CCCCAC 142568 |||||| Sbjct 5132426 CCCCAC 5132431 >seq3 Length=33710802 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 3113622 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3113563 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 3113562 AGCCCCAC 3113555 >seq411 Length=1168501 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1084439 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1084498 Query 142564 CCCAC 142568 ||||| Sbjct 1084499 CCCAC 1084503 >seq855 Length=4499644 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| | |||||||||||||||||| Sbjct 280851 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACYTTGTGGTCGTGGGTTCGAGC 280792 Query 142564 CCCAC 142568 ||||| Sbjct 280791 CCCAC 280787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820325382091