Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq790 98.7 8e-16 seq12 96.9 3e-15 seq296 89.7 4e-13 seq4 89.7 4e-13 seq777 87.8 2e-12 seq1167 86.0 5e-12 seq111 84.2 2e-11 >seq790 Length=2681026 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || || || || || || || Sbjct 2380145 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 2380086 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| |||||||| ||||||||||| ||||| ||||| || Sbjct 2380085 GCGAAGATGAGGCGCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 2380026 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| ||| ||||| || | ||| | || || || || || ||| Sbjct 2380025 ACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTGATGGTCTTACCCGTTAGGGTT 2379966 Query 114366 TTTACAAAAATCTGCATGG 114384 || || || |||||||||| Sbjct 2379965 TTCACGAAGATCTGCATGG 2379947 >seq12 Length=31678690 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/236 (67%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 114148 TACAAAT-ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTG 114206 || |||| ||| ||||| || | | ||| | ||| | ||||| ||||| ||||||||| Sbjct 16198398 TAGAAATCACCRCCACGGAGACGAAGAACGAGATGGAGGGTAGACTCTTTCTGAATGTTG 16198457 Query 114207 TAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266 ||||| | |||||| ||| || || ||||| |||||| |||| | | ||| ||| Sbjct 16198458 TAATCCGCAAGGGTACGACCATCCTCTAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGG 16198517 Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326 || || || || || || || || ||||| || | | || | || || | | Sbjct 16198518 TCAGGTGGGATCCCCTCCTTRTCYTGRATCTTRGCYTTGACATTGTCRATMGTRTCRGAG 16198577 Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | || | ||| || || || || || || || || |||||||| Sbjct 16198578 CTCTCRACCTCSARAGTKATCGTCTTCCCKGTYAGKGTYTTSACRAARATCTGCAT 16198633 >seq296 Length=1448965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || ||||| ||||||||||| | ||| | || || || || ||||| Sbjct 596804 GTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTTCCGTCCTCCAGCTGCTTACCG 596863 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||||||||||||||| || ||||| |||||| ||| Sbjct 596864 GCAAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCTTTC 596923 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | || || |||| || | ||| || || |||| || Sbjct 596924 ACATTATCAATGGTATCAGAACTCTCTACCTCCAACGTTATCGTCTTCCCAGTCAATGTC 596983 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 596984 TTCACAAAGATCTGCAT 597000 >seq4 Length=23020739 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/197 (69%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| ||||| || |||||| | |||||| ||| || || ||||| ||| Sbjct 9341652 GTAGACTCTTTCTGAATATTATAATCGGCAAGGGTACGACCATCCTCGAGCTGTTTCCCA 9341593 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| |||||||| || || || || ||||| |||||| ||| Sbjct 9341592 GCAAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTAGCTTTC 9341533 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | || || |||| || | || || || || || || Sbjct 9341532 ACGTTRTCAATAGTRTCAGAGCTCTCRACCTCCAGAGTRATYGTCTTYCCTGTYAGKGTY 9341473 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 9341472 TTCACAAAWATYTGCAT 9341456 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/198 (67%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||| ||||| | || || || || | || || || Sbjct 9340512 GTCGATTCCTTYTGGATGTTRTAATCKGCGAGRGTCCGGCCGTCYTCRARCTGCTTTCCG 9340453 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 9340452 GCGAAKATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTTAGCCTTA 9340393 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| | ||||| |||| ||| | || || || || || ||| Sbjct 9340392 ACGTTGTCGATGGTATCGGAGCTCTCGACTTCCARGGTGATGGTMTTCCCSGTTAGGGTT 9340333 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 9340332 TTCACRAAGATCTGCATG 9340315 >seq777 Length=131708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || |||||||| || || || || ||||| || || || || ||| ||| Sbjct 69227 CTTTCTGKATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTKCCGGCGAAGA 69286 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 |||| ||||| |||||||| |||||||| || ||||| ||||| || | | | Sbjct 69287 TGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 69346 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | ||| ||| || ||||| || | || | || || ||||| || ||||| || | Sbjct 69347 CGATGGTRTCGCTGCTCTCGACCTCRAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACGA 69406 Query 114373 AAATCTGCAT 114382 |||||||||| Sbjct 69407 AAATCTGCAT 69416 >seq1167 Length=79491 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| || |||||||| || || || || ||||| || || || || ||| ||| Sbjct 64089 CTTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGA 64148 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 |||| ||||| |||||||| |||||||| || ||||| ||||| || | | | Sbjct 64149 TGAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 64208 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | ||| ||| || ||||| || | || | || || ||||| || ||||| || | Sbjct 64209 CGATGGTATCGCTGCTCTCGACCTCAAGAGTGATGGTCTTCCCGGTTAGGGTTTTCACGA 64268 Query 114373 AAATCTGCAT 114382 |||||||||| Sbjct 64269 AAATCTGCAT 64278 >seq111 Length=1131199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||| |||||| | || || || ||||| || || || Sbjct 723813 GTCGATTCCTTCTGGATGTTATAATCGGCGAGGGTCCGGCCGTCCTCAAGCTGCTTTCCG 723872 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | ||||||||||| || || ||||| ||||| || || || ||||| || Sbjct 723873 GCGAATATGAGACGCTGCTGATCGGGAGGGATGCCCTCCTTATCTTGGATCTTAGCCTTA 723932 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| | ||||| |||| ||| | || || || || || ||| Sbjct 723933 ACGTTGTCGATGGTATCGGAGCTCTCGACTTCCAAGGTGATGGTCTTCCCSGTTAGGGTT 723992 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 723993 TTCACAAAGATCTGCATG 724010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127994394612