Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq673 93.3 3e-14 seq317 93.3 3e-14 seq12 93.3 3e-14 seq350 91.5 1e-13 seq325 91.5 1e-13 seq13 91.5 1e-13 seq449 84.2 2e-11 seq17 84.2 2e-11 seq104 82.4 6e-11 seq96 82.4 6e-11 >seq673 Length=4704030 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || || ||||||||| |||||||| || || Sbjct 4141980 CCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC- 4141922 Query 33961 AATTGTC-GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | |||| |||| ||||||||||| || || ||||||||||| ||| ||| Sbjct 4141921 AAGGGTCCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 4141862 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| |||||| || || ||| || | || | | || | ||| || Sbjct 4141861 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG---TCGATGGTGTCGGAAGACTC 4141805 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 4141804 AACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 4141750 >seq317 Length=1923123 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || ||||| || ||||||||| ||||| ||||| |||| || Sbjct 1310407 AGCCTGAGCACRAGGTGAAGAGTCGACTCCTTCTGGATGTTATAATCCGCCAGGGTCCGG 1310466 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| |||||||| || || | |||||||||| || | || ||| Sbjct 1310467 CCATCCTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGAATGCCCTCC 1310526 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG---CATTCGACC 34086 |||||| ||| || || ||||| | ||| ||| ||| | |||||| Sbjct 1310527 TTGTCCTGAATCTTCGCCT---------TCACATTGTCAATAGTATCGGAACTCTCGACC 1310577 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| || || ||||| || || ||||| || |||||||| Sbjct 1310578 TCCAGAGTTATGGTCTTCCCGGTAAGGGTCTTCACGAAAATTTGCAT 1310624 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| ||||| |||| || || || |||||||||||| || ||||| || Sbjct 1310853 ACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCGGC 1310912 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| | || ||||| ||||| |||||||| ||||| | |||||| ||| Sbjct 1310913 TAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCC 1310967 >seq12 Length=31678690 Score = 93.3 bits (102), Expect = 3e-14 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||||| || || || |||||||| ||||||||| ||||| |||||||| Sbjct 4925750 CCTCCTCTCAGCCTCAAGACMAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTGCA 4925809 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || ||||||||||| |||||||| |||| | ||| ||||| Sbjct 4925810 AGAGTTCGACCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATC 4925862 >seq350 Length=1502417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||||| || ||||| |||||||| ||||||||| ||||| |||||||| Sbjct 383271 CCTCCTCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTGCA 383330 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||||||| || |||||||| |||| | ||| ||||| Sbjct 383331 AGAGTTCGACCATCTTCCAATTGTTTACCGGCAAAAATCAATCTCTGTTGATC 383383 >seq325 Length=8951201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | || Sbjct 8316254 AGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGG 8316195 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 8316194 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 8316135 Query 34030 TTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 |||||| || || ||| || | || | | || | ||| || || | Sbjct 8316134 TTGTCCTGGATCTTGGCCTTCACATTG---TCGATGGTGTCGGAAGACTCAACCTCTAGG 8316078 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 8316077 GTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 8316033 >seq13 Length=34719086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | || Sbjct 8292186 AGGCGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGG 8292245 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 8292246 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 8292305 Query 34030 TTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 |||||| || || ||| || | || | | || | ||| || || | Sbjct 8292306 TTGTCCTGGATCTTGGCCTTCACATTG---TCGATGGTGTCGGAAGACTCAACCTCTAGG 8292362 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 8292363 GTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 8292407 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | ||| Sbjct 6268054 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGG 6267995 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| || | || ||| Sbjct 6267994 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 6267935 Query 34030 TTGTC 34034 ||||| Sbjct 6267934 TTGTC 6267930 >seq449 Length=2648660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || || ||||||||| |||||||| || || | || Sbjct 2148478 AGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGG 2148537 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 2148538 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 2148597 Query 34030 TTGTCC 34035 |||||| Sbjct 2148598 TTGTCC 2148603 >seq17 Length=24923725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || || ||||||||| |||||||| || || | || Sbjct 24420822 AGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGG 24420881 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 24420882 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 24420941 Query 34030 TTGTCC 34035 |||||| Sbjct 24420942 TTGTCC 24420947 >seq104 Length=1555027 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| ||||| |||| || || || |||||||||||| || ||||| || Sbjct 784234 ACCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCGGC 784293 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| | || ||||| ||||| |||||||| ||||| | |||||| ||| Sbjct 784294 TAGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCC 784348 >seq96 Length=1311920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 ||||| || | || || || || |||||||| ||| ||||||||| |||||||| || Sbjct 515738 AAACCACCGCGGAGGCGGAGTACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 515679 Query 33958 GCCAATTGTCGCTC-GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || || ||| || ||| || | |||||||| ||||| |||| | |||||| ||| Sbjct 515678 GC-AAGGGTCCTTCCGTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCCGG 515620 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGA 34073 || | || ||| |||||| ||||| ||||| | | || || || | || Sbjct 515619 AGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTAAC---ATTGTCAATAGTGTCGG-AGC 515564 Query 34074 TTCGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| | || || || || ||||| || || || || ||||||||||| Sbjct 515563 TTTCCACTTCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAGATTTGCAT 515509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056346163302