Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 118 2e-21 seq936 95.1 3e-14 seq232 89.7 1e-12 seq3 84.2 5e-11 >seq9 Length=33717675 Score = 118 bits (130), Expect = 2e-21 Identities = 574/892 (64%), Gaps = 47/892 (5%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| |||||||| || || || ||||| ||||| |||||||| | || Sbjct 736876 TCTGCATGTTCCCGATCCAGTACCCTGAAATCTGGGAAATGTACAAGAAGGCGGAAGCCT 736935 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAA 242984 |||| |||||| ||||||| || ||| || | |||||| | ||||| ||| Sbjct 736936 CCTTCTGGACCGCCGAGGAGGTCGACCTTTGCCAG--GACGTCCGCCACTGG-----GAA 736988 Query 242985 ACTCAAT--GACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCC 243042 ||| || |||| ||| | || ||| || ||||| || | || ||||| | ||| Sbjct 736989 GCTCTATCCGACGGCGAGAGGCACTTCGTCTCGCACATCCTCGCCTTCTTCGCCGCTTCC 737048 Query 243043 GATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAG 243100 ||||| ||||| |||| ||||| || | || || || ||| || ||| | | Sbjct 737049 GATGGAATTGTCCTGGAGAATCTCGCCGG--AAGGTTCATGAAGGAGGTCCAGGTCGCCG 737106 Query 243101 AGGCACGGCAATTTTATGCTTACCAAA---CATTCAACGAATCTATCCATTCTGAACAAT 243157 |||| || || || | | ||| | || || | ||| ||||| || || | Sbjct 737107 AGGCCCGCGCCTTCTACGGGTTCCAGATCGCAATCGA-GAAC--ATCCACTCCGAGATGT 737163 Query 243158 ATGCTCTTCTTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGA 243215 | || ||| |||| || || ||| ||| | ||| || || ||| | Sbjct 737164 ACAGCCTCCTTCTCGAGACG--TACATCAAGGATTCTGACGAGAAGCACCGCCTCTTCCA 737221 Query 243216 CGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGA 243275 ||| ||||| | ||| || || || ||||| | ||||| | || ||| | || Sbjct 737222 CGCGATCGACACCATCCCCTGCGTCGCGAAGAAGGCCCAGTGGGCCCTGAGATGGATCGA 737281 Query 243276 ACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335 | | | || || || ||||| |||| |||| | ||||| ||||| ||| | || Sbjct 737282 CGGCTCTGAGTCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTT 737341 Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCC 243391 || |||||||| ||||| || |||||||| || |||| || | ||||| || | Sbjct 737342 CTCTGGGAGTTTTTGCGCGATATTTTGGCT----AAAAAAGCGCGGTTTAATGCCGGGAC 737397 Query 243392 TCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGC 243451 | | | || |||||| | ||| || ||||||||| | ||| | |||| | | Sbjct 737398 TGACTTTCTCGAACGAGCTGATCTCACGAGACGAGGGCTTGCACTGCGACTTCGC-GTGT 737456 Query 243452 TTA-TGTATTCAAAGCTCCAGA---ACAAGCT-ACCATTCGAAACGGTCAAACAAATCAT 243506 || |||| || ||| | || | ||||| | | | | ||| ||| | Sbjct 737457 TTGCTGTACTC---GCTACTGAGGCAGAAGCTGAGCGA--GGATCGGATAAAGTCGATAG 737511 Query 243507 CACAGAA-GCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA 243565 | ||| || || || | ||| ||||| ||| | |||||||| | || ||| || Sbjct 737512 TTCGGAACGCGGTGGAGATCGAGAAGGAGTTCGTGTGCGACGCGCTGCCTTGCGCCCTGG 737571 Query 243566 TTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCA 243625 | || |||||| ||| || ||| | |||||||| ||||| || || || | | Sbjct 737572 TGGGGATGAACGGTGATCTGATGAGCACCTACATCGAGTTCGTCGCAGATCGGCTGCTGG 737631 Query 243626 TCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCA 243685 |||| | || || | |||| |||||||| | ||||||| || | | |||||||| | Sbjct 737632 GCGCGTTGGGATACGGGAAAATGTACAACGTCCAGAACCCTTTCGATTGGATGGAGCTGA 737691 Query 243686 TTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | || || ||||| || ||||||||||| || || ||| | || || || Sbjct 737692 TCAGCCTCCAGGGGAAGACCAACTTCTTCGAGAAACGCGTCGGCGAGTACCA 737743 >seq936 Length=1281144 Score = 95.1 bits (104), Expect = 3e-14 Identities = 180/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 149223 CACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAAT 149282 ||||||| ||| |||||||| || || || ||||| | ||| ||||| ||||| Sbjct 829871 CACATCTTGATCCCGGCGATCTTGGCAATGGCGTACCACTCGTTCGTGGGCTCGAGCGGG 829930 Query 149283 CCTGTCATCAGATA--TTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAAC 149340 || |||| || || |||| || ||| || | |||| ||| ||||||||||| Sbjct 829931 CCCGTCAGCA-ATGCGTTCT-CCGGGATGGGCTGAGGAGCGAATTTGGGGTAAATGCAGG 829988 Query 149341 TGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGAATGACATTCG 149400 | ||||| |||| ||| || || |||||||| | || || | ||||| || | Sbjct 829989 AGGAGCCGAGGAACAAGAGCTTCTTGACTCCGAATCGGTAGGCGGCGTCGATGACGTTGG 830048 Query 149401 TCTGAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATAC 149460 | || ||| ||||| || || ||||| || | ||| |||||| |||||||| | Sbjct 830049 TYTGGATCTGGAGATTGACGGCGATGAAATCCGCCGGGTAGGTGTTGTTGGCGTGAATGC 830108 Query 149461 CTCCTACTTTTGCAGCCGCGAG 149482 | || ||||| || || ||||| Sbjct 830109 CGCCGACTTTAGCGGCGGCGAG 830130 >seq232 Length=8559335 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 243514 GCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATG 243573 || || || | ||| ||||| ||| | |||||||| | || ||| || | || ||| Sbjct 721751 GCGGTGGAGATCGAGAAGGAGTTCGTGTGCGACGCGCTGCCTTGCGCCCTGGTGGGGATG 721810 Query 243574 AACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTT 243633 ||| ||| || ||| | |||||||| ||||| || || || | | |||| | Sbjct 721811 AACGGTGATCTGATGAGCACCTACATCGAGTTCGTCGCAGATCGGCTGCTGGGCGCGTTG 721870 Query 243634 GGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTT 243693 || || | |||| |||||||| | ||||||| || | | |||||||| || || Sbjct 721871 GGATACGGGAAAATGTACAACGTCCAGAACCCTTTCGATTGGATGGAGCTGATCAGCCTC 721930 Query 243694 CAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||| || ||||||||||| || || ||| | || || || Sbjct 721931 CAGGGGAAGACCAACTTCTTCGAGAAACGCGTCGGCGAGTACCA 721974 >seq3 Length=33710802 Score = 84.2 bits (92), Expect = 5e-11 Identities = 178/262 (68%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 149223 CACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAAT 149282 ||||||| ||| |||||||| || || || ||||| | ||| || || || || | Sbjct 25982146 CACATCTTGATCCCGGCGATCTTGGCGATGGCGTACCACTCGTTGGTAGGCTCCAGTGGT 25982205 Query 149283 CCTGTCATCAGATA--TTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAAC 149340 || |||| || || |||| || ||| || | |||| ||| ||||||||||| Sbjct 25982206 CCCGTCAGCA-ATGCGTTCT-CCGGGATGGGTTGAGGAGCGAATTTGGGGTAAATGCAGG 25982263 Query 149341 TGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGAATGACATTCG 149400 | || || |||| ||| || || ||||| || | || || | |||||||| | Sbjct 25982264 AGGAGCCAAGGAACAAGAGCTTCTTGACTCCAAATCGGTAGGCGGCGTCTATGACATTGG 25982323 Query 149401 TCTGAATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATAC 149460 |||| ||| ||||| || || ||||| || | | | |||||| |||||||| | Sbjct 25982324 TCTGGATCTGGAGATTGACGGCGATGAAATCCGCCGGGTACGTGTTGTTGGCGTGAATGC 25982383 Query 149461 CTCCTACTTTTGCAGCCGCGAG 149482 | || ||||| || || ||||| Sbjct 25982384 CACCGACTTTAGCGGCGGCGAG 25982405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102862322556850