Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1241 147 3e-30 seq855 114 2e-20 seq1168 105 8e-18 seq778 104 3e-17 seq864 93.3 5e-14 seq9 91.5 2e-13 >seq1241 Length=4265459 Score = 147 bits (162), Expect = 3e-30 Identities = 380/566 (67%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || || || || |||||||| |||||||| |||||||| | || |||||| |||||| Sbjct 519493 TACTCGCCGACGCGCTTCTCRAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 519552 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC--ACCCCAATCTGTTTGAGGAGAC 125876 |||| || ||||||| || | || ||| | | ||||| | || || | Sbjct 519553 CAATCGAACGGGTTCTGGACATTGTACATC-TTGCCGTATCCCAACGAGCCC-AGCAGCC 519610 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||||| ||| |||| |||||| |||| || ||||||||| | || || Sbjct 519611 GATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATACCCACCAGCGCAC 519670 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || |||||||| | | |||| || |||| || ||||| || | ||| ||||| | | Sbjct 519671 ACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCGACT 519730 Query 125997 GAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTC 126054 || ||| | | ||| | | || | || | | | || |||| | || || Sbjct 519731 TAACCCGATCCTCGCTCAGCT-TCTTCCTCAGCAGCGAGTACAGCAAACACG-CGAAGTC 519788 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| | |||||||| || ||||| ||||| || ||||| |||||| ||||| | Sbjct 519789 GCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAA 519848 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| ||||| || | ||| || ||||| || || ||||||||||| || |||||||| Sbjct 519849 ACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCAC 519908 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCAT 126234 || || || || | || ||||| || || || | || ||| | ||| ||| Sbjct 519909 GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA-CTCG--GAGCCGTCGATCCATCTCAG 519965 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 126294 |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| | Sbjct 519966 GGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTG 520025 Query 126295 CTTTTCTGATGGA-TCTTTGATGTAC 126319 ||| || | ||| || ||||||||| Sbjct 520026 CTTCTC-GTCGGAGTCCTTGATGTAC 520050 >seq855 Length=4499644 Score = 114 bits (126), Expect = 2e-20 Identities = 182/256 (71%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||||| ||||| || ||||| |||||| ||||| | ||| ||||| Sbjct 753905 CCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTT 753964 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | ||| || ||||| || || ||||||||||| || |||||||| || || || Sbjct 753965 TTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAG 754024 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | || ||||| || || || | || ||| | ||| ||| |||||||| Sbjct 754025 GCCACGATTCGCTCCGCGAAAGA-CTCG--GAGCCGTCGATCCATCTCAGGGCCCACTGG 754081 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 126304 ||||| ||| ||| || |||| ||| | |||||| | ||||| | ||| || | Sbjct 754082 GCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTC-GTC 754140 Query 126305 GGA-TCTTTGATGTAC 126319 ||| || ||||||||| Sbjct 754141 GGAGTCCTTGATGTAC 754156 >seq1168 Length=760787 Score = 105 bits (116), Expect = 8e-18 Identities = 249/373 (67%), Gaps = 6/373 (2%) Strand=Plus/Minus Query 8585 GACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 8644 ||| || ||| | || |||||| || | |||||| || |||||| |||||| | Sbjct 41781 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGTGCGGCGCATTGGTACAC 41722 Query 8645 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGA 8704 ||| ||||| || |||| || || || |||||| ||| ||||| ||||||||||| Sbjct 41721 CGTGAACTACCGTGAGGCCTACGGACTGTTCGCGTGCAACGGCATTCTGTTCAACCACGA 41662 Query 8705 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 8764 ||| || || || || | ||| ||||| |||||||||| | | | || Sbjct 41661 GTCGCCGCGGCGGGGGGAGAGTTTTGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGAT 41602 Query 8765 CGTCGCGGG--TG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 8821 | | ||| || |||| || | | ||||| || || | || ||||||||| Sbjct 41601 CAAAGAGGGATTGCAGAGCAAGCTGTT---CTTGGGAAATCTGCAGGCGTCGAGGGACTG 41545 Query 8822 GGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 8881 ||| |||| |||||| || || || |||||| | | || || || || || |||| Sbjct 41544 GGGTTTCGCCGGGGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGA 41485 Query 8882 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTT 8941 ||| || || || ||||||| |||| | ||| | || ||||||| | ||| | | || Sbjct 41484 CGACTACGTGGTGGCGACGGAGGAGTCGCACACGGTGGAGGAGTTCCTGGAGGTATCGTT 41425 Query 8942 TAGGGAAGTTGGA 8954 | || | || ||| Sbjct 41424 TGGGTACGTCGGA 41412 >seq778 Length=878642 Score = 104 bits (114), Expect = 3e-17 Identities = 248/373 (66%), Gaps = 6/373 (2%) Strand=Plus/Plus Query 8585 GACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 8644 ||| || ||| | || |||||| || | |||||| || |||||| |||||| | Sbjct 152086 GACGCCGTTCCACCCCCGATCCCCTTACGCCGTCTCGAAATGTGCGGCGCATTGGTACAC 152145 Query 8645 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGA 8704 ||| ||||| || |||| || || || |||||| ||| ||||| ||||||||||| Sbjct 152146 CGTGAACTACCGTGAGGCCTACGGACTGTTCGCGTGCAACGGCATTCTGTTCAACCACGA 152205 Query 8705 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 8764 ||| || || || || | ||| ||||| |||||||||| | | | || Sbjct 152206 GTCGCCGCGGCGGGGGGAGAGTTTTGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGAT 152265 Query 8765 CGTCGCGGG--TG-AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 8821 | | ||| || |||| || | | ||||| || || | || ||||||||| Sbjct 152266 CAAAGAGGGATTGCAGAGCAAGCTGTT---CTTGGGAAATCTGCAGGCGTCGAGGGACTG 152322 Query 8822 GGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 8881 ||| ||| |||||| || || || |||||| | | || || || || || |||| Sbjct 152323 GGGTTTYGCCGGGGACTACGTGGAGGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGA 152382 Query 8882 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTT 8941 ||| || || || ||||||| |||| | ||| | || ||||||| | ||| | | || Sbjct 152383 CGACTACGTGGTGGCGACGGAGGAGTCGCACACGGTGGAGGAGTTCCTGGAGGTATCGTT 152442 Query 8942 TAGGGAAGTTGGA 8954 | || | || ||| Sbjct 152443 TGGGTACGTCGGA 152455 >seq864 Length=2386779 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/285 (67%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 ||||| || || || | | | ||| |||||| || || | ||| ||||| || Sbjct 704291 TCAAACCGGCCWGGCCTCARTAAGGCAGAGTCAAGAATRTCTGCCCTGTTAGTCGCTGCA 704350 Query 10850 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 10909 | || | || || || | | ||||| |||||||| || ||||| || ||||| | | Sbjct 704351 ACCACRATRATACCAGTGTTGCCYTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGG 704410 Query 10910 GTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 10967 |||||||| | |||||| ||| | | | | | || | | | |||| || || | Sbjct 704411 GTTTGTTCCCTTTCATCGTTCCCT--CCTCCAATTCCAGTTCCTCTTTGCCGTCCAACAG 704468 Query 10968 CGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAGAT 11025 ||||||||||||| | || || || || ||| ||| || ||| |||| ||| | Sbjct 704469 CGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAAAAG 704526 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| || |||| ||||| ||||| ||||||||||| ||||| Sbjct 704527 ATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAACAAA 704571 >seq9 Length=33717675 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/254 (68%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| ||||| | ||| ||||| || | || | || || || | | ||||| Sbjct 26639020 GTCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAA 26639079 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| || ||||| || ||||| | ||||||||| | |||||| ||| | Sbjct 26639080 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCCWCC 26639139 Query 10939 ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG 10998 | || | | | |||| || || |||||||||||||| | || || || || || Sbjct 26639140 AATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGG 26639199 Query 10999 TTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCACA 11056 | ||| || ||| |||| ||| | ||| || |||| ||||| ||||| ||| Sbjct 26639200 TGCATTCTCCTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACA 26639257 Query 11057 AACATTTCCACAAA 11070 |||||||| ||||| Sbjct 26639258 AACATTTCAACAAA 26639271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344258883080