Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq111 105 5e-18 seq317 91.5 1e-13 seq104 91.5 1e-13 seq5 91.5 1e-13 seq931 87.8 1e-12 seq96 86.0 4e-12 seq275 84.2 2e-11 seq12 84.2 2e-11 seq296 82.4 5e-11 >seq111 Length=1131199 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||||| | || ||||| | || || || ||||| ||||||||||| Sbjct 723099 CCACCCCTCAATCGAAGGACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCC 723158 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || | ||||| ||||| || || || | ||||| | ||| || || ||| Sbjct 723159 AGAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 723218 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| |||||| ||| || | || || |||||| | | || || Sbjct 723219 ATACCCTCCTTGTCTTGAATTTTTGCTTTCACGTTRTCAATCGTATCGGAACTCTCGACC 723278 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||| || || ||||| || || || || |||||||||||| Sbjct 723279 TCCAGGGTAATTGTCTTCCCTGTTAGGGTCTTCACGAAAATTTGCATA 723326 >seq317 Length=1923123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || || || | ||||| || ||||| ||||||||||| Sbjct 1310624 TGCCACCTCTCAGACGCAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCG 1310683 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | || |||| || ||||| || |||||| | ||||| | ||| ||||| || Sbjct 1310684 CCAAAGTCCTTCCGTCCTCCAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 1310743 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| ||||| || || ||| || ||| | || || ||||| | || | Sbjct 1310744 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCGA 1310803 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || || || || || || ||||| |||||||| |||||| Sbjct 1310804 CCTCGAGAGTKATTGTCTTCCCCGTTAGGGTTTTGACAAAAATCTGCATA 1310853 >seq104 Length=1555027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || || || | ||||| || ||||| ||||||||||| Sbjct 784005 TGCCACCTCTCAGACGCAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAATCCG 784064 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | || |||| || ||||| || |||||| | ||||| | ||| ||||| || Sbjct 784065 CCAAAGTCCTTCCGTCCTCCAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 784124 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| ||||| || || ||| || ||| | || || ||||| | || | Sbjct 784125 GGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCGA 784184 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || || || || || || ||||| |||||||| |||||| Sbjct 784185 CCTCGAGAGTTATTGTCTTCCCCGTTAGGGTTTTGACAAAAATCTGCATA 784234 >seq5 Length=31606955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || || ||||| || || || || |||||||| ||| Sbjct 1684200 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 1684141 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || | || |||| ||||| |||||| | ||||| | ||| ||||| | Sbjct 1684140 CAAGGGTCCTGCCATCCTCTAGCTGTTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGG 1684081 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| ||| || || | || || || ||| |||| | Sbjct 1684080 GAATCCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGA 1684021 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || || || ||||| || ||||| Sbjct 1684020 CCTCAAGGGTGATAGTCTTRCCGGTGAGGGTCTTGACAAAGATCTGCAT 1683972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || || ||||| || || ||||| |||||||| || Sbjct 1683972 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCTG 1683913 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| ||||||| | || || || ||| | || | |||||| ||||| | Sbjct 1683912 CGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGG 1683853 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| || || | || || || || | || | Sbjct 1683852 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCA 1683793 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 1683792 CCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATTTGCAT 1683744 >seq931 Length=1020267 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/204 (66%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| ||| || | | | || || | || Sbjct 505866 TGSAGRGTGGACTCCTTYTGWATGTTGTAGTCGGCRAGKGTSCKKCCRTCCTCAAGCTGC 505925 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| || | |||| | || ||||| ||||| || |||||||| || ||| Sbjct 505926 TTGCCWGCAAAGATCARCCTTTGYTGGTCTGGGGGAATGCCCTCCTTGTCYTGGATYTTG 505985 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || |||| || || | ||| |||||||| || ||| Sbjct 505986 GCYTTSACATTATCAATWGTRTCAGARCTTTCAACYTCKAGGGTRATGGTTTTTCCAGTC 506045 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | || || ||||| ||||||||| Sbjct 506046 AAGGTYTTCACAAAGATTTGCATA 506069 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/203 (68%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || ||||||||||| ||| ||| | | | || || | || Sbjct 506550 TGGAGGGTGGACTCCTTYTGTATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGC 506609 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | |||| | || ||||| ||||| || |||||||| || ||| Sbjct 506610 TTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 506669 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || ||||| || |||| || || | ||| ||||| || ||||| Sbjct 506670 GCTTTGACATTATCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTTGCCTGTG 506729 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 506730 AGGGTTTTCACRAAGATCTGCAT 506752 >seq96 Length=1311920 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||||| || ||||| || || || || |||||||| ||| ||| | | |||| || Sbjct 515490 AACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 515431 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| || |||||| | || ||||| ||||| ||||||||||| Sbjct 515430 GAGCTGCTTGCCGGCAAATATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTG 515371 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| ||| | || || || ||| |||| || || | ||| ||||| || Sbjct 515370 GATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATGGTCTT 515311 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| || ||||| Sbjct 515310 TCCGGTTAGGGTTTTCACAAAGATCTGCAT 515281 >seq275 Length=2000977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| || | ||| | || || || || Sbjct 275274 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTCCCATCCTCCAACTGC 275333 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||| | ||| ||||| || || ||||||||||| ||| || Sbjct 275334 TTTCCAGCGAAAATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTA 275393 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || | || || || ||||| ||||| || |||||| Sbjct 275394 GCCTTCACATTGTCGATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCTGTC 275453 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || |||||| Sbjct 275454 AAGGTCTTCACGAAGATCTGCATA 275477 >seq12 Length=31678690 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/211 (66%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| |||||||| ||||| || ||||||||||| || | | | || || Sbjct 16198424 AACGAGATGGAGGGTAGACTCTTTCTGAATGTTGTAATCCGCAAGGGTACGACCATCCTC 16198483 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||| |||||| | ||||| | ||| ||||| ||| || || ||||| || Sbjct 16198484 TAGCTGTTTCCCAGCGAAGATCAACCTCTGCTGGTCAGGTGGGATCCCCTCCTTRTCYTG 16198543 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| | || || || || | || || || | || || || || Sbjct 16198544 RATCTTRGCYTTGACATTGTCRATMGTRTCRGAGCTCTCRACCTCSARAGTKATCGTCTT 16198603 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || || |||||| Sbjct 16198604 CCCKGTYAGKGTYTTSACRAARATCTGCATA 16198634 >seq296 Length=1448965 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || ||||| ||||||||||| ||| | || |||| || | || Sbjct 596798 TGAAGGGTAGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTTCCGTCCTCCAGCTGC 596857 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || || | || | | ||| ||||| ||||| || |||||||| || ||| Sbjct 596858 TTACCGGCAAAGATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTT 596917 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| ||| | || || ||||| | | ||||| || || || || || || || || Sbjct 596918 GC-TTTCACATTATCAATGGTATCAGAACTCTCTACCTCCAACGTTATCGTCTTCCCAGT 596976 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 596977 CAATGTCTTCACAAAGATCTGCAT 597000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357386551000535