Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq9 288 1e-72 seq672 260 2e-64 seq1241 174 2e-38 seq13 167 3e-36 seq1081 107 2e-18 seq5 96.9 4e-15 seq629 95.1 2e-14 seq8 95.1 2e-14 >seq9 Length=33717675 Score = 288 bits (318), Expect = 1e-72 Identities = 435/614 (71%), Gaps = 4/614 (1%) Strand=Plus/Minus Query 6511 GAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATT 6570 |||||||| |||||| |||||| || || | | |||||| || ||||| || | || Sbjct 26714822 GAAATGTAACCAACGTTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGYGGTT 26714763 Query 6571 AGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATT 6630 || |||||||| ||||| || || || |||| || || | || | ||| ||||| Sbjct 26714762 AGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTGAAACCACGGAATGTATT 26714703 Query 6631 TGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAG 6690 || ||||||||| |||| |||||||| | || |||||||||||||||| || | Sbjct 26714702 TGCACCATCACCATCTCCAAATAAAGTATTTTTTATGATAGCACCGTGAATAGCGCATAA 26714643 Query 6691 CAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTT 6750 ||| || | || || | || | || |||||||||||||| ||||| || ||||| || Sbjct 26714642 CAAAGCAGCGCCCAACACCCCAACAACTCCCATCATATGAAATGGGTTTAGTGTCCAATT 26714583 Query 6751 GTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGC 6810 || || ||||| | ||||| | ||| | ||||| ||||| |||||||| || || Sbjct 26714582 ATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCTGCTACACCAAAACTAGGTGC 26714523 Query 6811 AAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAAT 6870 |||||||||||| ||||| || | ||||| || || || ||||| ||||| |||||||| Sbjct 26714522 AAAGAACCAACTAGACTGACCTAACGGATAAATTAGGAATACAGAAACAAA-ACAGCAAT 26714464 Query 6871 GGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAA 6929 ||||| || || || |||||||| | || | | | || ||| || || | ||||| Sbjct 26714463 TGGACCGGAGAATGCAATTGCATTACAAGGTCACAATTCAAC-AGATCGAGCAAGCTCAA 26714405 Query 6930 ACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATA 6989 | || || | ||| |||||||| || | || || || || || || ||||||| | ||| Sbjct 26714404 ATTGACGTAACAT-AAACCTATTAGTTCGAAAGCGCCATGTAGTGCAACAAAAGTCTATA 26714346 Query 6990 GTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAA 7049 | | || | ||| ||| || |||||||| || ||||| ||||||||||| | | Sbjct 26714345 GACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAACA 26714286 Query 7050 GTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATC 7109 | | | || | | | | ||| ||||| || || ||| || | | ||| ||| | | Sbjct 26714285 ACAAGAAGTGCGCTAAACTATTAGCCGGAGTGGAAACTGCATCACTTAAGAAGTTAGAGC 26714226 Query 7110 CCTCAAGATACGAA 7123 | || | ||| ||| Sbjct 26714225 CTTCCAAATAGGAA 26714212 >seq672 Length=1945142 Score = 260 bits (288), Expect = 2e-64 Identities = 425/614 (69%), Gaps = 17/614 (3%) Strand=Plus/Plus Query 6511 GAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATT 6570 |||||||| |||||| |||||| || || | | |||||| || ||||| || | || Sbjct 1649223 GAAATGTAACCAACGTTTATTGGAAAAAGCAACCCTAAAGATTTGGGACCAAAAGYGGTT 1649282 Query 6571 AGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATT 6630 || |||||||| ||||| || || || |||| || || | |||| Sbjct 1649283 AGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTAAACCG------------ 1649330 Query 6631 TGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAG 6690 || | ||| |||||| |||| |||||||| | || |||||||||||||||| || | Sbjct 1649331 -GAAT-TTCCCCATCTCCAAATAAAGTATTTTYTATGATAGCACCGTGAATAGCGCATAA 1649388 Query 6691 CAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTT 6750 || || | || || | || | || |||||||||||||| ||||| || ||||| || Sbjct 1649389 CARAGCAGCGCCCAACACCCCAACAACTCCCATCATATGAAATGGGTTTAGTGTCCAATT 1649448 Query 6751 GTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGC 6810 || || ||||| | ||||| | ||| | ||||| ||||| |||||||| || || Sbjct 1649449 ATGAAACCCCTGRAAAAAGAGGATGAATCAAAATATAGCTGCTACACCAAAACTAGGTGC 1649508 Query 6811 AAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAAT 6870 ||||||||||| ||||| || | |||| || || || ||||| ||||| |||||||| Sbjct 1649509 AAAGAACCAACYAGACTGACCTAAYRGATAAATTAGGAATACAGAAACAAAAACAGCAAT 1649568 Query 6871 GGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAA 6929 ||||| || || || |||||||| | || | | | | ||| || || | ||||| Sbjct 1649569 TGGACCGGAGAATGCAATTGCATTAYAAGGTC-ACAATTSAACAGATCGAGCAAGCTCAA 1649627 Query 6930 ACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATA 6989 | || || | ||| |||||||| || | || || || || || || ||||||| | ||| Sbjct 1649628 ATTGACGTAACAT-AAACCTATTAGTCCGAAAGCGCCATGTAGTGCAACAAAAGTCTATA 1649686 Query 6990 GTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAA 7049 | | || | ||| ||| || |||||||| || ||||| ||||||||||| | | Sbjct 1649687 GACTGCCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAACA 1649746 Query 7050 GTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATC 7109 | | | || | | | | ||| ||||| || || ||| || | | ||| ||| | | Sbjct 1649747 ACAAGAAGTGCGCTAAACTATTAGCCGGAGTGGAAACTGCATCACTTAAGAAGTTAAAGC 1649806 Query 7110 CCTCAAGATACGAA 7123 | || | ||| ||| Sbjct 1649807 CTTCCAAATAGGAA 1649820 >seq1241 Length=4265459 Score = 174 bits (192), Expect = 2e-38 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 8126 GAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGA 8185 || ||||| ||| ||||| || || ||||| ||||| || |||||||||||||||| Sbjct 4250375 GAATATGCAACAACAATCCAAGGGCGTATACCCAGACGAAAACTAAGTTCCCACTCACGA 4250434 Query 8186 CCCATGTATGCATAG--ATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCAC 8243 |||| ||| ||| || | ||| | | |||||| | | || || | ||||||||| Sbjct 4250435 CCCACGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCAC 4250492 Query 8244 CGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAA 8303 | ||||| | ||| ||||||| ||||| |||||||| || || || ||||| | ||| | Sbjct 4250493 CATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAAACCTA 4250552 Query 8304 TAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAAC 8363 |||| ||||| ||||| || |||| | | || || ||| | ||||| | | || | Sbjct 4250553 TAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAAAGATC 4250612 Query 8364 CAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGA 8423 ||| || |||||||| || || ||||| || | ||||| ||||| | |||||| | | Sbjct 4250613 CAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGCAATGAAAGCAATAA 4250672 Query 8424 TGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACA 8482 | || ||| | || || | | | ||| | ||||||| ||||| ||||| || | Sbjct 4250673 TAAATACAGA-AGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATCCAATG 4250731 Query 8483 TACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || ||| |||| | || ||||| | || |||| || Sbjct 4250732 TAAAGATGATTTTCAATGCTGGTTATCTAGCTACAAAA 4250769 >seq13 Length=34719086 Score = 167 bits (184), Expect = 3e-36 Identities = 281/403 (70%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 8121 GAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACT 8180 ||| || ||||| ||| ||||| || || ||||| ||| || ||||||||||| Sbjct 21513605 GAGYTGAATATGCAACAACAATCCAAGGGCGTATACCCAGAMRAAAACTAAGTTCCCACT 21513546 Query 8181 CACGACCCATGTATGCATAG--ATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGG 8238 ||||||||| ||| ||| || | ||| | | |||||| | | || || | |||| Sbjct 21513545 CACGACCCACGTA-GCA-AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGG 21513488 Query 8239 ACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAG 8298 |||||| ||||| | ||| ||||||| ||||| |||||||| || || || ||||| | Sbjct 21513487 ACCACCATTGTATAACCATTCATCAACAGAAGTCGCTTCCCATATAGGGTAAAAGTGCAA 21513428 Query 8299 ACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAG 8358 ||| ||||| ||||| ||||| || |||| | | || || ||| | ||||| | | Sbjct 21513427 ACCTATAGCTGCAGAAGTAGGAATAATGGCACAAAAAATAATATTGCTTCCATAAAGTAA 21513368 Query 8359 CGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGC 8418 || |||| || |||||||| || || ||||| || | ||||| |||| | |||||| Sbjct 21513367 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGTGCAGYAATGAAAGC 21513308 Query 8419 GACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAAC 8477 | || || ||| | || || | | | ||| | ||||||| ||||| ||||| | Sbjct 21513307 AATAATAAATACAGA-AGTTGCGGTCAATAAAGTAAGGATCATCAAAACACCAAACCATC 21513249 Query 8478 CGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 | | || ||| |||| | || ||||| | || |||| || Sbjct 21513248 CAATGTAAAGATGATTTTCAATGCTGGTTATCTAGCTACAAAA 21513206 >seq1081 Length=585217 Score = 107 bits (118), Expect = 2e-18 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||||||||| ||||||| ||||||||| |||| ||||||| || | | || Sbjct 578730 TCACCATCTTCAAATAAAGTATCTTCTACAGTAACACCATGAATAGTGCATAAYAGAGCA 578789 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 || || | || | || | |||||||||||| ||| | || || || || || Sbjct 578790 GTGCCCAACACTCCAACAACTCTCATCATATGAAATRAGTTCAATGTTCAATTATGAAAC 578849 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 ||||| | ||||| | ||| | ||||| ||||| |||| ||| ||||||||||| Sbjct 578850 CCCTGGAAAAAGAGGATGAATCAAAATATAGCTGCCACACGAAAATTGAGCGCAAAGAAC 578909 Query 6818 CAACTGGACT 6827 ||||| |||| Sbjct 578910 CAACTAGACT 578919 >seq5 Length=31606955 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 10/182 (5%) Strand=Plus/Minus Query 6514 ATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATTAGC 6573 ||||| |||||| ||||| || || | ||| |||| || ||| | ||||| Sbjct 10237812 ATGTAACCAACGTCTATTGGAAAAAGCAACCCCATAGATTTGGGACSA-AAACG------ 10237760 Query 6574 CGTGACCATCGAA-TAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTG 6632 |||||||| ||| || || || || |||| || || | ||| || ||| ||||||| Sbjct 10237759 -GTGACCATTGAAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAATGTATTTG 10237701 Query 6633 ATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCA 6692 |||||||||||||| |||||||| ||||| |||||||| ||||||| ||| ||| Sbjct 10237700 CACCATCACCATCTTCAAATAAAGTATT-TCTACGGTAGCACCATGAATAGAACAAAGCC 10237642 Query 6693 AT 6694 || Sbjct 10237641 AT 10237640 >seq629 Length=2291386 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7748 AAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAG 7807 |||||||| | ||| | |||||||| || ||| ||||||||||||| | ||||| Sbjct 2029912 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 2029971 Query 7808 TATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAG 7867 || || ||||| || ||||| |||||||| ||||| |||||||| || | ||||| || Sbjct 2029972 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 2030031 Query 7868 TT 7869 || Sbjct 2030032 TT 2030033 >seq8 Length=29603939 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7748 AAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAG 7807 |||||||| | ||| | |||||||| || ||| ||||||||||||| | ||||| Sbjct 4092039 AAGAAGTGTAAAGAATGAGAGTTGTTCAAACTAGCATATTGGAAGATCAATCAGCCAAAA 4091980 Query 7808 TATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAG 7867 || || ||||| || ||||| |||||||| ||||| |||||||| || | ||||| || Sbjct 4091979 TAACCATGAGCCGCTACGATATTGTAGGTTTCTTCCTCTTGACCAAATCTGTAACCGTAA 4091920 Query 7868 TT 7869 || Sbjct 4091919 TT 4091918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622115071523440