Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 149 8e-31 seq1241 143 3e-29 seq855 107 2e-18 seq864 84.2 3e-11 >seq9 Length=33717675 Score = 149 bits (164), Expect = 8e-31 Identities = 381/569 (67%), Gaps = 17/569 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| || |||||||||||||| |||||||| | ||||||||| |||||| Sbjct 737741 GTACTCGCCGACGCGTTTCTCGAAGAAGTTGGTCTTCCCCTGGAGGCTGATCAGCTCCAT 737682 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 127349 |||| || ||||||| ||| | ||| | | | ||||| | || || | Sbjct 737681 CCAATCGAAAGGGTTCTGGACGTTGTACATTTTCCCGTATCCCAACGCGCCC-AGCAGCC 737623 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | |||| |||| ||||| |||| ||| |||||| || | ||| | Sbjct 737622 GATCTGCGACGAACTCGATGTAGGTGCTCATCAGATCACCGTTCATCCCCACCAGGGCGC 737563 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||||||| | | |||| ||||||| || ||||| || | ||| || || | | Sbjct 737562 AAGGCAGCGCGTCGCACACGAACTCCTTCTCGATCTCCACCGCGTTCCGAACTATCGACT 737503 Query 127470 GAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA-CA-GCAAACT 127526 || ||| | | ||| || ||| | | || || | | | || || || | Sbjct 737502 TTATCCGATCCTCGCTCAG--CTTCTGCCTCA-GTAGCGAGTACAGCAAACACGCGAAGT 737446 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| | |||||||| || ||||| || || |||||||| ||| || ||||| | Sbjct 737445 CGCAGTGCAAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTCAGTCCCGGCATTA 737386 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 ||| ||||| || | ||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 737385 AACCGCGCTTTTTTAGCCAAAATATCGCGCAAAAACTCCCAGAGAAGAAAATCCCTTCCA 737326 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCA 127706 | || || || || | | ||||| || || || || || | ||| ||| Sbjct 737325 CGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCAGA---GCCGTCGATCCATCTCA 737269 Query 127707 TCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA---GTT 127763 |||||||| ||||| ||| ||| || |||| ||| | |||||| | |||| | | Sbjct 737268 GGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGT 737209 Query 127764 CCTTCTTTTCTGATGGATCTTTGATGTAC 127792 ||||| || || ||| ||||||||| Sbjct 737208 GCTTCTCGTCAGA---ATCCTTGATGTAC 737183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/254 (67%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| ||||| | ||| ||||| || | || | || || || | | || || Sbjct 26639020 GTCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAA 26639079 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| || ||||| | ||||||||| | |||||| ||| | Sbjct 26639080 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCCWCC 26639139 Query 12854 ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG 12913 | || | | | |||| || || ||||||||||| |||| || || || || || Sbjct 26639140 AATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGG 26639199 Query 12914 TTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACA 12971 | ||| || ||| |||| ||| | ||| || |||| ||||| ||||| ||| Sbjct 26639200 TGCATTCTCCTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACA 26639257 Query 12972 AACATCTCCACAAA 12985 ||||| || ||||| Sbjct 26639258 AACATTTCAACAAA 26639271 >seq1241 Length=4265459 Score = 143 bits (158), Expect = 3e-29 Identities = 526/810 (65%), Gaps = 17/810 (2%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || ||||| |||||||| |||||||| |||||||| | |||||||| |||||| Sbjct 519493 TACTCGCCGACGCGCTTCTCRAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 519552 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC--ACCCCAATCTGTTTGAGGAGAC 127349 |||| || ||||||| || | || ||| | | ||||| | || || | Sbjct 519553 CAATCGAACGGGTTCTGGACATTGTACATC-TTGCCGTATCCCAACGAGCCC-AGCAGCC 519610 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| ||| |||| |||||| |||| || ||||||||| | || || Sbjct 519611 GATCCGCCACGAACTCGATGTACGTGCCCATCAGATCGCCGTTCATACCCACCAGCGCAC 519670 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||||||| | | |||| || |||| || ||||| || | ||||||||| | | Sbjct 519671 ACGGCAGCGCGTCGCACACGAACTCCCTCTCGATCTCCACCGCGTTCCGTACGATCGACT 519730 Query 127470 GAATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACA-GCAAACTC 127527 || ||| | | ||| | | || | | | | | || ||| || || || Sbjct 519731 TAACCCGATCCTCGCTCAGCT-TCTTCCTCAGCAGCGAGTACAGCAA-ACACGCGAAGTC 519788 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| | |||||||| || ||||| ||||| || ||||| ||| || ||||| | Sbjct 519789 GCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAA 519848 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| ||||| || | ||| || ||||| || || || |||||||| ||||||||||| Sbjct 519849 ACCGCGCTTTTTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCAC 519908 Query 127648 ACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 127707 || || || || | | ||||| || || || ||| || | ||| ||| Sbjct 519909 GCAGGCAAAGGCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATCTCAG 519965 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 127767 |||||||| ||||| ||| ||| || |||| ||| | |||||| | ||||| | Sbjct 519966 GGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTG 520025 Query 127768 CTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGA 127826 ||| || | ||| || ||||||||| | || | || || | ||| ||||| Sbjct 520026 CTTCTC-GTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGA 520084 Query 127827 CCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 127884 | ||| ||||| ||| || ||||||| | ||| || ||| | ||| ||||| Sbjct 520085 TGTTCTCA--ATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTC 520142 Query 127885 ATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 127944 | ||| | | || |||||||| || || || ||||| |||| || || || Sbjct 520143 CTTCATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCGGAGGCAGCGAAGAAGGC 520202 Query 127945 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGATC 128004 || || | | | ||| | | || ||| |||| || ||||| | || || Sbjct 520203 GAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCCTCCCAGTGGCGGATGTC 520262 Query 128005 CTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 || | || || |||||||| || ||||| Sbjct 520263 CTGGCATAGGTCGACCTCCTCGGCGGTCCA 520292 >seq855 Length=4499644 Score = 107 bits (118), Expect = 2e-18 Identities = 327/500 (65%), Gaps = 9/500 (2%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| || ||||| ||||| || ||||| ||| || ||||| | ||| ||||| Sbjct 753905 CCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTTT 753964 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || ||||| || || || |||||||| ||||||||||| || || || Sbjct 753965 TTAAGCCAAAATATCGCGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAAAG 754024 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | ||||| || || || ||| || | ||| ||| |||||||| Sbjct 754025 GCCACGATTCGCTCCGCGAAAGACTCGGA---GCCGTCGATCCATCTCAGGGCCCACTGG 754081 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 127777 ||||| ||| ||| || |||| ||| | |||||| | ||||| | ||| || | Sbjct 754082 GCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTC-GTC 754140 Query 127778 GGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTCATT 127836 ||| || ||||||||| | || | || || | ||| ||||| | ||| Sbjct 754141 GGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCA-- 754198 Query 127837 ATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAA 127894 ||||| ||| || ||||||| | ||| || ||| | ||| ||||| | ||| Sbjct 754199 ATGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAAC 754258 Query 127895 TTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATAC 127954 | | || |||||||| || || || ||||| |||| || || || || || | | Sbjct 754259 CTCCCAGCGAGATTCTCAAGGACGATGCCGTCGGAGGCAGCGAAGAAGGCGAGAATGTGC 754318 Query 127955 TTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGATCCTTTGAGAGA 128014 | ||| | | || ||| |||| || ||||| | || |||| | || Sbjct 754319 GAGACGAAGTGCCTCTCGCCGTCGGATAGGGCCTCCCAGTGGCGGATGTCCTGGCATAGG 754378 Query 128015 TCTACCTCCTCCGCAGTCCA 128034 || |||||||| || ||||| Sbjct 754379 TCGACCTCCTCGGCGGTCCA 754398 >seq864 Length=2386779 Score = 84.2 bits (92), Expect = 3e-11 Identities = 190/285 (67%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 ||||| || || || | | | ||| |||||| || || | ||| ||||| || Sbjct 704291 TCAAACCGGCCWGGCCTCARTAAGGCAGAGTCAAGAATRTCTGCCCTGTTAGTCGCTGCA 704350 Query 12765 ATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 12824 | || | || || || | | || || |||||||| || ||||| || ||||| | | Sbjct 704351 ACCACRATRATACCAGTGTTGCCYTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGG 704410 Query 12825 GTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 12882 |||||||| | |||||| ||| | | | | | || | | | |||| || || | Sbjct 704411 GTTTGTTCCCTTTCATCGTTCCCT--CCTCCAATTCCAGTTCCTCTTTGCCGTCCAACAG 704468 Query 12883 CGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAGAT 12940 |||||||||| |||| || || || || ||| ||| || ||| |||| ||| | Sbjct 704469 CGTCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAAAAG 704526 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || |||| ||||| ||||| |||||||| || ||||| Sbjct 704527 ATCACGAACTCGGGAAGCACCAACACCAACAAACATTTCAACAAA 704571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497606281160