Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 167 4e-36 seq1241 163 5e-35 seq855 131 3e-25 seq232 91.5 2e-13 >seq9 Length=33717675 Score = 167 bits (184), Expect = 4e-36 Identities = 552/844 (65%), Gaps = 37/844 (4%) Strand=Plus/Minus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT----TCCATGAACCCGAATGG 159705 |||||||| ||||||||||| |||| ||| |||| ||||| | |||| || Sbjct 737725 TTCTCGAAGAAGTTGGTCTTCCCCT----GGAGGCTGATCAGCTCCATCCAATCGAAAGG 737670 Query 159706 GTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAA 159765 ||||| |||| || ||| |||| | || |||||| || ||||| || || Sbjct 737669 GTTCTGGACGTTGTACATTTTCCCGTATCCCAACGCGCCCAGCAGCCGATCTGCGACGAA 737610 Query 159766 TTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCT 159823 ||||||||| | | |||| | |||| ||| ||||||| ||| | || || ||||| Sbjct 737609 CTCGATGTAGGTGCTCATCAGATCACCGTTCATCCCCACCAGGGCGCAA--GGCAGCGCG 737552 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTC 159882 || ||| ||||||||||| ||||| ||||| ||| | || ||| | | || || Sbjct 737551 TCGCACACGAACTCCTTCTCGATCTCCACCGCGTTCCGA-ACTATCGACTTTATCCGATC 737493 Query 159883 GTACCCCGGCTT--GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 | | | |||| ||| | || | || ||| | ||||| |||||||||||| Sbjct 737492 CTCGCTCAGCTTCTGCCTCA---GTAGCGAGTA--CAGCAAACACGCGAAGTCGCAGTGC 737438 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 | |||||||| || ||||| | |||||| || | | || |||||||| | || ||| Sbjct 737437 AAGCCCTCGTCTCGTGAGATCAGCTCGTTCGAGAAAGTCAGTCCCGGCATTAAACCGCGC 737378 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGC 160059 ||| |||||||| || | ||||||| | || | || || ||||| |||||| || Sbjct 737377 TTTTTTAGCCAAAATATCG-CGCAAAAACTCCCAGAGAAGAAAATCCCTTCCACGCAGGC 737319 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCA 160119 ||| ||||||| | ||| | ||||| | | | | | | |||| || |||||| Sbjct 737318 AAAGGCCACGATTCGCTCCGCGAAAGA---CTCAGAGCCGTCGATCCATCTCAGGGCCCA 737262 Query 160120 TTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 | |||||||| |||| ||| || ||| |||| |||| || | | || || ||| Sbjct 737261 CTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTC 737202 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | ||||||||| || | | || |||||| || | ||| | || || Sbjct 737201 GTCAGAATCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTC 737142 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 ||| || ||||| || |||||| ||||| ||| ||||||| |||| Sbjct 737141 GATTGCGATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATGAA 737082 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 |||| | ||||| | || | || |||| || || ||||| || | | ||| Sbjct 737081 CCTTCCGGCGAGATTCTCCAGGACAATTCCATCGGAAGCGGCGAAGAAGGCGAGGATGTG 737022 Query 160360 AGAGATGAAATGTCTCTCGTCTTTG--TTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGG 160417 |||| ||| || |||||| | | | | ||| ||||||||| ||||| ||| Sbjct 737021 CGAGACGAAGTGCCTCTCGCCGTCGGATAGAG-----CTTCCCAGTGGCGGACGTCCTGG 736967 Query 160418 GCCAAA--TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCC 160475 |||| || ||||| || ||| |||| || || | || | |||||||| ||| Sbjct 736966 --CAAAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCCGCCTTCTTGTACATTTCCC 736909 Query 160476 AGAT 160479 |||| Sbjct 736908 AGAT 736905 >seq1241 Length=4265459 Score = 163 bits (180), Expect = 5e-35 Identities = 544/838 (65%), Gaps = 23/838 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||||||||| |||| || | || ||||| | |||| ||||| Sbjct 519507 CTTCTCRAAGAAGTTGGTCTTCCCCTGCAGGCTGATCAGCTCCATCCAATCGAACGGGTT 519566 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGA--GAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 || || | || ||| |||| | ||||| ||||| || || ||||| || Sbjct 519567 CTGGACATTGTACATCTTGCCGTATCCCAACGAGCC--CAGCAGCCGATCCGCCACGAAC 519624 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 |||||||| | | |||| | || | ||| || |||| |||| | || ||||| || Sbjct 519625 TCGATGTACGTGCCCATCAGATCGCCGTTCATACCCACCAGCGCACACGGCAGCGCGTCG 519684 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| |||||| |||| ||||| ||||| ||| || || ||| | || || || | Sbjct 519685 CACACGAACTCCCTCTCGATCTCCACCGCGTTCCGT-ACGATCGACTTAACCCGATCCTC 519743 Query 159886 CCCCGGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 | | |||| | || | || |||| | ||||| ||||||||||||| Sbjct 519744 GCTCAGCTTCTTCCTCAGCAGCGAGT------ACAGCAAACACGCGAAGTCGCAGTGCAA 519797 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||| | |||||||| | | || |||||||| | || ||| Sbjct 519798 GCCCTCGTCTCGCGAGATCAGTTCGTTGGAGAAAGTCAGTCCCGGCATTAAACCGCGCTT 519857 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061 ||| |||||||| || | |||| || | || | | || || |||||||||||| |||| Sbjct 519858 TTTAAGCCAAAATATCG-CGCAGAAACTCCCCGAGAAGAAAATCCCCTCCACGCAGGCAA 519916 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATT 160121 | ||||||| | ||| | ||||| | || | | | | |||| || |||||| | Sbjct 519917 AGGCCACGATTCGCTCCGCGAAAGA---CTCGGAGCCGTCGATCCATCTCAGGGCCCACT 519973 Query 160122 CAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 |||||||| |||| ||| || ||| |||| |||| || | | || || ||| | Sbjct 519974 GGGCCTTCTTCGCGACGCAGGGGATGGTGTCGATCGCGTGGAAGAGGCGGTGCTTCTCGT 520033 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 |||||||| || | | || |||||| || | ||| | || || | Sbjct 520034 CGGAGTCCTTGATGTACGTCTCGAGAAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAA 520093 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| || |||||| ||||| ||| ||||||| | |||| Sbjct 520094 TGGCTATCTGGAACCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACCTCCTTCATAAACC 520153 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | | ||||| || || | ||||||| ||| || ||||| || | | ||| | Sbjct 520154 TCCCAGCGAGATTCTCAAGGACGATGCCGTCGGAGGCAGCGAAGAAGGCGAGAATGTGCG 520213 Query 160362 AGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCA 160421 ||| ||| || |||||| | | | || | |||||||| | ||| ||| | Sbjct 520214 AGACGAAGTGCCTCTCGCCGTCGGATAGGGCC---TCCCAGTGGCGGATGTCCTGGCATA 520270 Query 160422 AATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || ||| |||| || |||| || | |||||||| ||||||| Sbjct 520271 GGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTCCCAGAT 520328 >seq855 Length=4499644 Score = 131 bits (144), Expect = 3e-25 Identities = 371/566 (66%), Gaps = 8/566 (1%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| | ||||| ||||||||||||| |||||||| || ||||| | |||||||| | Sbjct 753876 ACAGCAAACACGCGAAGTCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGTTCGTTGGAGA 753935 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | || |||||||| | || ||| ||| |||||||| || | |||| || | || | Sbjct 753936 AAGTCAGTCCCGGCATTAAACCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAACTCCCC 753994 Query 160035 TA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 | || || |||||||||||| ||||| ||||||| | ||| | ||||| | | Sbjct 753995 GAGAAGAAAATCCCCTCCACGCAGGCAAAGGCCACGATTCGCTCCGCGAAAGA---CTCG 754051 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 | | | | | |||| || |||||| | |||||||| |||| ||| || ||| ||| Sbjct 754052 GAGCCGTCGATCCATCTCAGGGCCCACTGGGCCTTCTTCGCGACGCAGGGGATGGTGTCG 754111 Query 160154 ACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTC 160213 | |||| || | | || || ||| | |||||||| || | | || Sbjct 754112 ATCGCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCTTGATGTACGTCTCGAGAAGGAGG 754171 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 |||||| || | ||| | || || ||||| ||||| || |||||| ||| Sbjct 754172 CTGTACATCTCGGAGTGGATGTTCTCAATGGCTATCTGGAACCCGTAGAAGGCGCGGGCC 754231 Query 160274 TCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCG 160333 || ||| ||||||| | ||||| | | ||||| || || | |||||| Sbjct 754232 TCGGCGACCTGGACCTCCTTCATAAACCTCCCAGCGAGATTCTCAAGGACGATGCCGTCG 754291 Query 160334 GCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTC 160393 | ||| || ||||| || | | ||| |||| ||| || |||||| | | | || | Sbjct 754292 GAGGCAGCGAAGAAGGCGAGAATGTGCGAGACGAAGTGCCTCTCGCCGTCGGATAGGGCC 754351 Query 160394 TTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCC 160453 |||||||| | ||| ||| | || ||||| || ||| |||| || ||| Sbjct 754352 ---TCCCAGTGGCGGATGTCCTGGCATAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCC 754408 Query 160454 TGAGCAGTTTTGTACATGGCCCAGAT 160479 | || | |||||||| ||||||| Sbjct 754409 TCGGCCTTCTTGTACATTTCCCAGAT 754434 >seq232 Length=8559335 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Minus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT----TCCATGAACCCGAATGG 159705 |||||||| ||||||||||| |||| ||| |||| ||||| | |||| || Sbjct 721956 TTCTCGAAGAAGTTGGTCTTCCCCT----GGAGGCTGATCAGCTCCATCCAATCGAAAGG 721901 Query 159706 GTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAA 159765 ||||| |||| || ||| |||| | || |||||| || ||||| || || Sbjct 721900 GTTCTGGACGTTGTACATTTTCCCGTATCCCAACGCGCCCAGCAGCCGATCTGCGACGAA 721841 Query 159766 TTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCT 159823 ||||||||| | | |||| | |||| ||| ||||||| ||| | || || ||||| Sbjct 721840 CTCGATGTAGGTGCTCATCAGATCACCGTTCATCCCCACCAGGGCGCAA--GGCAGCGCG 721783 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGC 159855 || ||| ||||||||||| ||||| ||||| Sbjct 721782 TCGCACACGAACTCCTTCTCGATCTCCACCGC 721751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142765760560