Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq317 98.7 7e-16 seq111 91.5 1e-13 seq104 89.7 4e-13 >seq317 Length=1923123 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| ||||| ||||| || | ||| || || || |||||||||||||| Sbjct 1310854 CCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCGGCT 1310913 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| ||||| || || ||| |||| || | | |||||| |||| ||| Sbjct 1310914 AGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 1310973 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GTGTCTGCGCTTTCCAC 39671 | || || || || || || || | ||| | | | ||||| | ||| ||||| Sbjct 1310974 ATTCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCCGAGCTCTCCAC 1311032 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| || || || |||| ||||| |||||||||||||| Sbjct 1311033 TTCCAGAGTAATCGTMTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1311080 >seq111 Length=1131199 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| || || |||||||||||||| || ||||| || || ||||| ||| Sbjct 723099 CCACCCCTCAATCGAAGGACCAAATGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCC 723158 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| |||||||| || ||| |||| || || | ||||||||| | || Sbjct 723159 AGAGTCCTGCCATCTTCCAATTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 723218 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| |||||| ||| | ||| | | || || | || || || Sbjct 723219 ATACCCTCCTTGTCTTGAATTTTTGCTTTCA-CGTTRTCAATCGTATCGGAACTCTCGAC 723277 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||||| || || |||| || || ||||| || ||||| Sbjct 723278 CTCCAGGGTAATTGTCTTCCCTGTTAGGGTCTTCACGAAAATTTGCAT 723325 >seq104 Length=1555027 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| ||||| ||||| || | ||| || || || |||||||||||||| Sbjct 784235 CCTCCTCTCAATCGCAGAACCAAGTGGAGAGTCGACTCCTTCTGAATATTATAATCGGCT 784294 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| ||||| || || ||| |||| || | | |||||| |||| ||| Sbjct 784295 AGGGTTCGGCCATCCTCCAACTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 784354 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || || || || || || || | ||| | | | ||||| | ||| ||||| Sbjct 784355 ATTCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCCGAGCTCTCCAC 784413 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| || || |||| | | | ||| |||||||||||||| Sbjct 784414 TTCCAGAGTAATCGTCTT-CCCGGTTAGGGTTTRACGAAGATCTGCAT 784460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347364303807683