Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malus_20domestica_20[refseq_20GCF_5F000148765.1_202012-08-16] 1,251 sequences; 1,874,765,253 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq864 122 1e-22 seq9 122 1e-22 seq1241 100 4e-16 seq855 100 4e-16 seq8 93.3 5e-14 seq12 86.0 8e-12 >seq864 Length=2386779 Score = 122 bits (134), Expect = 1e-22 Identities = 233/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || || || || | || | ||||| || | | |||||| Sbjct 704321 TCAAGAATRTCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAAA 704380 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| |||||||||||||| |||| |||||||||| |||||| ||| || | | Sbjct 704381 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCT--CCTC 704438 Query 16038 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 16095 | | |||| | | |||| ||| || || ||||| ||||||| || || ||||| | Sbjct 704439 CAATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAG 704498 Query 16096 GTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || | | | |||| ||| ||||| || || || || || |||||||| Sbjct 704499 GTGCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAAC 704556 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || ||||| | | | | | || | || || || ||| | |||||| | Sbjct 704557 AAACATTTCAACAAATTCAGAACCTG-AGATGGAGAAAAATGGAACACCCGCTTCACCAG 704615 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 |||| || || || |||||||| || || ||||| Sbjct 704616 CAATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCTGG 704652 >seq9 Length=33717675 Score = 122 bits (134), Expect = 1e-22 Identities = 230/335 (69%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| ||||| | | || || || || | || | ||||| || | | |||||| Sbjct 26639021 TCAAGAATATCTGCCCTGTTAGTCGCTGCAACCACRATRATACCAGTGTTGCCYTCAAAA 26639080 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| |||||||||||||| |||| |||||||||| |||||| ||| || | Sbjct 26639081 CCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCCCTTTCATCGTTCCCTCCWCCA 26639140 Query 16038 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 16097 |||| | | |||| ||| || || ||||| ||||||| || || ||||| ||| Sbjct 26639141 ATTCCAGTTCCTCTTTGCCGTCCAACAGCGTCAATTTCATCAACAAATACAATGCAAGGT 26639200 Query 16098 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 16155 ||| || | | | |||| ||| ||||| || || || || || |||||||||| Sbjct 26639201 GCATTCTC-CTTG-GCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCAACAA 26639258 Query 16156 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 16214 |||| || ||||| | | | | | || | || || || ||| | |||||| ||| Sbjct 26639259 ACATTTCAACAAAYTCAGAACCTG-AGATGGAGAAAAATGGAACACCMGCTTCACCAGCA 26639317 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || || || |||||||| || || || || Sbjct 26639318 ATTGCCTTTGCTAGCAGAGTCTTTCCGGTTCCYGG 26639352 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || |||||| || | || ||||| || || || || || ||||||||||| Sbjct 737292 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAAGGGATTTTCTTCTCTGGGAGT 737351 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||||| || | |||||| || ||||| ||| | ||||| || || ||||| ||| Sbjct 737352 TTTTGCGCGATATTTTGGCTAAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCGAAC 737411 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||||| || |||||||| Sbjct 737412 GAGCTGATCTCACGAGACGAGGG 737434 >seq1241 Length=4265459 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 519941 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 519882 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 519881 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 519822 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 || || ||||| || |||||||| Sbjct 519821 GAACTGATCTCGCGAGACGAGGG 519799 >seq855 Length=4499644 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || |||||| || | || ||||| || || ||||| || |||||||| || Sbjct 754047 TCTTTCGCGGAGCGAATCGTGGCCTTTGCCTGCGTGGAGGGGATTTTCTTCTCGGGGAGT 753988 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||| || ||||| ||| | ||||| || || ||||||||| Sbjct 753987 TTCTGCGCGATATTTTGGCTTAAAAAGCGCGGTTTAATGCCGGGACTGACTTTCTCCAAC 753928 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 || || ||||| || |||||||| Sbjct 753927 GAACTGATCTCGCGAGACGAGGG 753905 >seq8 Length=29603939 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| ||||| ||||||||||| |||| ||||||||| | | Sbjct 359224 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--G 359167 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| || || | | ||| | ||||| ||||| |||||||||||||| || ||| Sbjct 359166 CCGCCCATYCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCAATGAACACAATG 359107 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| | || || || | ||||| || | | || ||||| | Sbjct 359106 CACGG--CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGYACTCTCGACGCCCCCACTC 359049 Query 16150 CAACAAACATCTCCACAAA 16168 | ||||||| |||||| || Sbjct 359048 CCACAAACAACTCCACGAA 359030 >seq12 Length=31678690 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| ||||| |||||||| || |||| ||||||||| | | Sbjct 20683403 AAACCCATCCATCTCCGTCAGCAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--G 20683346 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| || || | | ||| | ||||| ||||| |||||||||||||| || ||| Sbjct 20683345 CCGCCCATCCCCGCGCCTCTCTGCCTCCCCACCGCATCTATCTCATCAATGAACACAATG 20683286 Query 16092 CATGG 16096 || || Sbjct 20683285 CACGG 20683281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732693140720